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Histone_H2B_domain_containing_protein
Euk-VirPandoravirus_dulcis
Histone_H2B_domain_containing_protein__YP_008319525__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319525 ↗
- Protein ID:
- Histone_H2B_domain_containing_protein
- Kingdom:
- euk
Quality
60.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 102-198
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00125.31 best | Histone | 53.3 | 4.20e-14 | 57.7% | 68.2% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eqzF00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.83 | 67.0 | 6.46e-01 | 85.6% | 75.7% |
| 4csrA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.83 | 60.0 | 6.33e-01 | 81.4% | 83.0% |
| 5y27A00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.81 | 64.0 | 6.40e-01 | 86.6% | 81.6% |
| 1jfiB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.81 | 73.0 | 6.46e-01 | 100.0% | 69.6% |
| 4csrB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.74 | 50.0 | 5.46e-01 | 70.1% | 82.9% |
| 4wzsB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.72 | 61.0 | 5.82e-01 | 100.0% | 77.9% |
| 1id3G00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.71 | 50.0 | 4.88e-01 | 74.2% | 65.7% |
| 7egfc01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.71 | 48.0 | 5.06e-01 | 74.2% | 77.9% |
| 3b0bB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.71 | 51.0 | 5.17e-01 | 84.5% | 76.3% |
| 1q9cA01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.68 | 53.0 | 4.49e-01 | 80.4% | 59.2% |
| 2ehwA00 | 6.10.140.1220 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 51.0 | 4.78e-01 | 85.6% | 75.7% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.59 | 41.0 | 3.19e-01 | 71.1% | 70.2% |
| 3k7dA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 41.0 | 3.66e-01 | 76.3% | 76.9% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 38.0 | 3.46e-01 | 74.2% | 69.0% |
| 5wbwA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.52 | 40.0 | 3.34e-01 | 80.4% | 86.6% |
| 3aqtA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 3.23e-01 | 84.5% | 77.9% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3354299 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.92 | 64.0 | 7.47e-01 | 75.3% | 98.6% |
| 3618209 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.90 | 67.0 | 7.60e-01 | 76.3% | 100.0% |
| 3770398 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.85 | 77.0 | 6.81e-01 | 100.0% | 68.9% |
| 3991353 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.85 | 77.0 | 6.90e-01 | 100.0% | 71.5% |
| 4000370 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.85 | 78.0 | 6.84e-01 | 100.0% | 69.6% |
| 3789652 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.85 | 78.0 | 6.92e-01 | 100.0% | 72.3% |
| 3520351 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.84 | 61.0 | 6.38e-01 | 83.5% | 81.1% |
| 3597285 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.84 | 73.0 | 7.25e-01 | 90.7% | 88.0% |
| 4587004 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.84 | 72.0 | 7.11e-01 | 88.7% | 86.0% |
| 4486875 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.84 | 76.0 | 7.10e-01 | 100.0% | 80.9% |
| 3110584 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.83 | 67.0 | 6.42e-01 | 83.5% | 74.3% |
| 3926693 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.83 | 75.0 | 6.65e-01 | 100.0% | 69.6% |
| 3595345 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.82 | 64.0 | 6.63e-01 | 80.4% | 86.7% |
| 3737033 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.82 | 71.0 | 6.47e-01 | 99.0% | 71.2% |
| 4243384 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.82 | 65.0 | 6.16e-01 | 90.7% | 71.3% |
| 3647944 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.81 | 64.0 | 6.23e-01 | 90.7% | 76.2% |
| 4178971 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.81 | 72.0 | 6.68e-01 | 94.8% | 76.7% |
| 3785081 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.81 | 71.0 | 6.60e-01 | 95.9% | 75.8% |
| 3472682 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.81 | 52.0 | 5.86e-01 | 73.2% | 84.0% |
| 3526552 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.81 | 65.0 | 6.51e-01 | 93.8% | 83.0% |
| 5049997 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.81 | 48.0 | 4.03e-01 | 71.1% | 37.4% |
| 3925064 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.80 | 50.0 | 5.66e-01 | 70.1% | 81.3% |
| 3268260 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.80 | 65.0 | 5.01e-01 | 83.5% | 53.7% |
| 3516007 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.80 | 69.0 | 5.89e-01 | 90.7% | 60.7% |
| 3926428 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.78 | 63.0 | 6.38e-01 | 92.8% | 86.3% |
| 4323084 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.78 | 49.0 | 5.54e-01 | 73.2% | 82.7% |
| 3862143 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.78 | 55.0 | 5.18e-01 | 83.5% | 61.7% |
| 3299042 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.78 | 62.0 | 5.23e-01 | 90.7% | 52.9% |
| 4874430 | 148.1.1.17 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CENP-T_C | 0.77 | 49.0 | 5.29e-01 | 73.2% | 75.0% |
| 3318822 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.76 | 60.0 | 6.09e-01 | 89.7% | 85.3% |
| 3905241 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.76 | 57.0 | 5.93e-01 | 79.4% | 84.4% |
| 3725958 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.76 | 53.0 | 5.70e-01 | 73.2% | 82.4% |
| 4011410 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.76 | 54.0 | 5.76e-01 | 83.5% | 83.5% |
| 3836893 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.76 | 51.0 | 5.58e-01 | 74.2% | 82.5% |
| 3932799 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.76 | 51.0 | 5.61e-01 | 74.2% | 83.7% |
| 4142118 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.76 | 71.0 | 6.43e-01 | 100.0% | 80.0% |
| 4002595 | 148.1.1.47 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone, CENP-T_C | 0.76 | 58.0 | 4.90e-01 | 80.4% | 63.2% |
| None | — | 0.76 | 51.0 | 4.99e-01 | 74.2% | 63.8% | |
| 3687002 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.76 | 54.0 | 5.12e-01 | 83.5% | 62.6% |
| 3628331 | 148.1.1.7 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAF | 0.75 | 54.0 | 5.82e-01 | 83.5% | 85.9% |
| 3638356 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.75 | 50.0 | 5.46e-01 | 74.2% | 82.5% |
| 3788076 | 148.1.1.9 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_20kDa | 0.75 | 52.0 | 5.60e-01 | 73.2% | 82.4% |
| 3489407 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.73 | 50.0 | 5.45e-01 | 73.2% | 85.0% |
| 3823306 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.73 | 53.0 | 5.00e-01 | 75.3% | 87.0% |
| 1680650 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.72 | 61.0 | 5.82e-01 | 100.0% | 77.9% |
| 3670131 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.72 | 61.0 | 5.43e-01 | 94.8% | 65.9% |
| 3446393 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.72 | 60.0 | 5.94e-01 | 93.8% | 87.0% |
| 2732324 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.72 | 51.0 | 5.19e-01 | 74.2% | 75.5% |
| 3421885 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.71 | 54.0 | 5.02e-01 | 81.4% | 64.2% |
| 3802534 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.71 | 52.0 | 4.73e-01 | 75.3% | 68.0% |
| 3371994 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.71 | 54.0 | 4.95e-01 | 81.4% | 61.6% |
| 3062176 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.71 | 50.0 | 4.89e-01 | 74.2% | 66.4% |
| 3234004 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.71 | 51.0 | 4.97e-01 | 76.3% | 68.6% |
| 3233328 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.70 | 56.0 | 5.62e-01 | 92.8% | 84.0% |
| 4142629 | 148.1.1.1 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone | 0.69 | 49.0 | 5.11e-01 | 76.3% | 78.9% |
| 3673258 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.68 | 52.0 | 5.29e-01 | 87.6% | 83.2% |
| 4934221 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.65 | 45.0 | 5.29e-01 | 71.1% | 100.0% |
| 3611456 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 39.0 | 3.02e-01 | 73.2% | 53.7% |