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III

Euk-Vir

Turkey_adenovirus_1

III__YP_003933585__Turkey_adenovirus_1__878329

Identity

Accession:: YP_003933585 ↗
Protein ID:: III
Kingdom:: euk

Quality

74.7 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Turkey_adenovirus_1

TaxID: 878329

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 80-144_383-422_470-520

PDB

Domain cluster: rep: capsid_protein_III__YP_009505659__Fowl_aviadenovirus_6__172862__D107-170_410-455_491-547

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01686.24 best	Adeno_Penton_B	100.1	1.60e-28	42.3%	14.1%
PF01686.24	Adeno_Penton_B	78.4	6.00e-22	34.0%	11.1%
PF01686.24	Adeno_Penton_B	38.9	5.70e-10	26.9%	8.5%

D2 medium residues 145-233_253-299_358-382

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01686.24 best	Adeno_Penton_B	101.2	7.20e-29	55.3%	17.0%
PF01686.24	Adeno_Penton_B	79.3	3.30e-22	31.1%	10.4%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x9tA02	3.90.1620.10	Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2	0.90	88.0	7.04e-01	100.0%	78.6%
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.71	30.0	4.47e-01	85.1%	94.0%
5wm1A05	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.62	33.0	3.75e-01	95.0%	67.5%
3gqcC04	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.62	32.0	3.69e-01	95.0%	65.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1158630	6009.1.1.1 ↗	a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Adeno_Penton_B	0.93	90.0	7.64e-01	100.0%	96.2%
2528175	6009.1.1.0 ↗	a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein	0.92	90.0	7.52e-01	100.0%	96.4%
4889927	6009.1.1.1 ↗	a+b complex topology › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Insertion domain in Adenovirus penton base protein › Adeno_Penton_B	0.92	83.0	7.23e-01	91.9%	89.6%
3414649	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.62	33.0	3.63e-01	96.3%	60.7%
2673723	302.1.1.1 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C	0.61	34.0	3.63e-01	96.3%	61.0%
4028174	302.1.1.0 ↗	a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain	0.59	33.0	3.53e-01	96.3%	62.2%
3429580	2484.1.1.43 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5	0.54	35.0	3.61e-01	96.9%	65.6%
3896769	10.2.1.0 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins)	0.51	30.0	2.86e-01	83.2%	48.6%

D3 medium residues 234-252_300-357

PDB

Domain cluster: rep: III__YP_004123742__Murine_adenovirus_2__931972__D200-218_268-311