←Back to structures

IMGVR_UViG_2022920007_000001-2022920007-YNPsite14_CeleraDRAFT_161510

Arc-Vir

IMGVR_UViG_2022920007_000001-2022920007-YNPsite14_CeleraDRAFT_161510

Identity

Kingdom:
archaea

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-103
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5qivA01 3.30.200.60 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Peptidase C65 Otubain, subdomain 1 0.65 46.0 3.94e-01 75.5% 48.1%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.64 54.0 4.49e-01 100.0% 97.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.11e-01 89.8% 53.3%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.62 53.0 3.58e-01 100.0% 35.7%
4iumA00 3.90.70.160 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 38.0 2.84e-01 77.6% 23.6%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.60 51.0 4.70e-01 100.0% 89.4%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 50.0 4.63e-01 100.0% 92.4%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.59 50.0 4.67e-01 95.9% 93.7%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 40.0 2.99e-01 73.5% 29.7%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 50.0 3.86e-01 95.9% 64.9%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.58 49.0 3.61e-01 100.0% 58.3%
1b3mA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.56 48.0 3.24e-01 98.0% 76.4%
4k22A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.56 49.0 3.82e-01 100.0% 90.7%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 48.0 3.87e-01 100.0% 60.2%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.55 45.0 4.31e-01 100.0% 83.9%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.54 46.0 3.72e-01 98.0% 95.9%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.28e-01 100.0% 51.6%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.04e-01 93.9% 75.6%
7vpqF01 2.60.40.3130 Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) 0.53 43.0 3.50e-01 95.9% 83.0%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 38.0 3.88e-01 83.7% 83.3%
5fclE01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 43.0 3.61e-01 100.0% 64.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940155 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.67 45.0 3.77e-01 71.4% 45.9%
3964275 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.65 56.0 4.55e-01 100.0% 96.8%
4601397 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.65 55.0 4.52e-01 100.0% 96.8%
4344650 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 55.0 4.46e-01 100.0% 95.0%
4399696 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 55.0 4.50e-01 100.0% 96.8%
4168875 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 54.0 4.49e-01 100.0% 91.6%
4062422 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 54.0 4.46e-01 100.0% 96.8%
4433128 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 53.0 4.39e-01 100.0% 96.8%
4065090 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 53.0 4.35e-01 98.0% 95.8%
4618294 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 51.0 4.28e-01 100.0% 95.8%
3772431 3380.1.1.3 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › zf-FCS 0.59 36.0 3.89e-01 98.0% 75.0%
3681619 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 39.0 2.51e-01 71.4% 30.4%
4596341 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 48.0 3.92e-01 91.8% 61.1%
3566649 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.58 36.0 3.73e-01 100.0% 66.7%
3840816 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.56 34.0 3.47e-01 71.4% 60.0%
4982571 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.56 35.0 3.37e-01 98.0% 53.4%
4521547 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 46.0 3.80e-01 93.9% 66.7%
3526185 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.55 36.0 3.72e-01 93.9% 71.1%
806 270.1.1.4 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C_2 0.55 45.0 4.30e-01 100.0% 83.9%
3986884 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 45.0 3.29e-01 98.0% 70.7%
4937151 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 36.0 3.68e-01 87.8% 76.0%
4504459 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 43.0 3.85e-01 100.0% 88.0%