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IMGVR_UViG_2022920017_000001-2022920017-YNPsite19_CeleraDRAFT_198630
Arc-VirIMGVR_UViG_2022920017_000001-2022920017-YNPsite19_CeleraDRAFT_198630
Identity
- Kingdom:
- archaea
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-48
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.76 | 61.0 | 4.44e-01 | 91.1% | 39.5% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.75 | 65.0 | 4.18e-01 | 100.0% | 81.8% |
| 2xmxA01 | 1.20.1440.280 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.73 | 59.0 | 4.16e-01 | 88.9% | 34.3% |
| 3lxuX03 | 6.10.250.3080 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 52.0 | 4.63e-01 | 75.6% | 64.5% |
| 1ux5A01 | 6.10.30.50 | Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.59 | 38.0 | 3.46e-01 | 77.8% | 48.3% |
| 2ettA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 48.0 | 3.51e-01 | 93.3% | 38.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3626624 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.83 | 66.0 | 4.41e-01 | 84.4% | 25.3% |
| 4443096 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.80 | 68.0 | 4.35e-01 | 93.3% | 40.5% |
| 3387027 | 101.1.1.33 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 62.0 | 4.35e-01 | 91.1% | 39.2% |
| 3740761 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.73 | 60.0 | 3.92e-01 | 97.8% | 25.0% |
| 3679788 | 101.1.20.5 ↗ | alpha arrays › HTH › HTH › Sigma54 core-binding domain › TFIIB | 0.73 | 51.0 | 3.34e-01 | 73.3% | 40.0% |
| 4647979 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.72 | 61.0 | 3.57e-01 | 93.3% | 22.6% |
| 4779949 | 210.1.4.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 | 0.71 | 56.0 | 3.90e-01 | 88.9% | 27.4% |
| 4459698 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.67 | 49.0 | 4.22e-01 | 82.2% | 49.3% |
| 4441740 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.65 | 55.0 | 3.31e-01 | 97.8% | 25.1% |
| 1412420 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.61 | 49.0 | 3.31e-01 | 86.7% | 23.4% |
| 1546162 | 160.1.1.2 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › AF-4 | 0.58 | 25.0 | 2.75e-01 | 86.7% | 42.1% |
| 3277940 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.56 | 48.0 | 3.05e-01 | 91.1% | 17.9% |