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IMGVR_UViG_2061766007_001514-2061766007-_HiSeq_18403790
Arc-VirIMGVR_UViG_2061766007_001514-2061766007-_HiSeq_18403790
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-55
D2
high
residues 57-226
Domain cluster:
rep: IMGVR_UViG_3300012103_000046-3300012103-Ga0136578_1014992__D102-247
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 22.0 | 3.52e-01 | 97.1% | 92.7% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 20.0 | 3.29e-01 | 98.8% | 92.5% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.57 | 18.0 | 3.22e-01 | 94.1% | 100.0% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 27.0 | 3.47e-01 | 100.0% | 83.3% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.53 | 25.0 | 3.63e-01 | 97.6% | 97.5% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 24.0 | 3.38e-01 | 94.7% | 90.8% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 22.0 | 3.36e-01 | 95.9% | 95.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3949049 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.85 | 32.0 | 4.73e-01 | 100.0% | 74.7% |
| 4891117 | 4038.1.1.11 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal | 0.69 | 63.0 | 4.33e-01 | 100.0% | 56.5% |
| 3942943 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.65 | 61.0 | 5.28e-01 | 100.0% | 90.6% |
| 1263580 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.52 | 23.0 | 3.33e-01 | 95.9% | 92.0% |
| 1263586 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 23.0 | 3.39e-01 | 95.9% | 95.8% |
| 4939428 | 56.2.1.1 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT | 0.51 | 19.0 | 3.26e-01 | 92.4% | 98.3% |