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IMGVR_UViG_2061766007_001514-2061766007-_HiSeq_18404140

Arc-Vir

IMGVR_UViG_2061766007_001514-2061766007-_HiSeq_18404140

Identity

Kingdom:
archaea

Quality

92.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-45
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.91 82.0 6.25e-01 97.8% 46.9%
3qoqC00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.89 82.0 7.94e-01 100.0% 100.0%
2kelA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.87 76.0 7.58e-01 97.8% 97.8%
1b01A00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.87 75.0 7.63e-01 95.6% 100.0%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 57.0 5.75e-01 75.6% 100.0%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 52.0 4.09e-01 71.1% 34.1%
3oceA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.79 53.0 5.00e-01 71.1% 60.0%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.78 62.0 3.83e-01 86.7% 99.6%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 5.41e-01 86.7% 93.1%
3ucxA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 52.0 3.20e-01 77.8% 26.7%
2rhcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 50.0 3.13e-01 75.6% 13.6%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.71 49.0 4.43e-01 73.3% 53.2%
4hjhA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.71 49.0 3.70e-01 75.6% 100.0%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 48.0 3.97e-01 77.8% 39.3%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.68 49.0 3.06e-01 75.6% 95.0%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 48.0 4.31e-01 84.4% 59.7%
4h15A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 46.0 2.94e-01 80.0% 28.4%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 48.0 4.10e-01 93.3% 76.2%
7jj9A02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.61 45.0 3.28e-01 80.0% 43.3%
1wivA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 40.0 3.44e-01 71.1% 42.5%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.61 45.0 3.50e-01 86.7% 100.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.60 47.0 3.90e-01 91.1% 73.3%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.59 44.0 3.58e-01 91.1% 83.6%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 45.0 2.68e-01 84.4% 26.0%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 3.79e-01 100.0% 80.8%
2m4gA00 6.10.20.70 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.59 45.0 3.91e-01 86.7% 52.0%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 46.0 4.53e-01 86.7% 100.0%
1ou0A00 3.40.50.10230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase 0.58 50.0 3.32e-01 97.8% 40.0%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 38.0 3.81e-01 73.3% 70.8%
3hulA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.55 44.0 3.19e-01 84.4% 40.0%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 41.0 3.54e-01 77.8% 50.0%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 37.0 2.47e-01 73.3% 14.9%
7by3B01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.55 45.0 3.48e-01 97.8% 80.7%
2gmsB01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 41.0 2.66e-01 88.9% 76.2%
3pf6A00 6.10.250.2290 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 40.0 3.63e-01 80.0% 68.3%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 41.0 3.02e-01 86.7% 59.5%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284512 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.96 84.0 7.09e-01 93.3% 61.4%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.96 71.0 5.66e-01 77.8% 43.8%
4632125 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.95 78.0 6.54e-01 86.7% 60.0%
4970117 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.95 77.0 5.94e-01 86.7% 45.6%
4058428 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.95 76.0 6.99e-01 84.4% 69.1%
5076430 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.93 79.0 6.86e-01 91.1% 63.1%
3504504 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.93 70.0 7.84e-01 77.8% 100.0%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.93 72.0 5.30e-01 82.2% 37.1%
4980496 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.93 74.0 4.99e-01 86.7% 26.7%
5045263 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.92 74.0 6.01e-01 86.7% 48.8%
5050174 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.92 72.0 5.73e-01 84.4% 47.1%
4937892 101.1.3.32 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › RHH_1 0.92 80.0 6.03e-01 95.6% 45.0%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.92 73.0 5.96e-01 86.7% 51.2%
3955846 101.1.11.30 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH 0.90 73.0 6.36e-01 86.7% 60.0%
3985544 101.1.11.65 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RepB-RCR_reg 0.90 78.0 7.30e-01 95.6% 81.8%
4993165 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.89 71.0 5.47e-01 86.7% 65.3%
3973493 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.89 70.0 6.09e-01 84.4% 61.5%
4984124 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.89 71.0 6.22e-01 86.7% 60.0%
2455631 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.89 77.0 6.19e-01 95.6% 54.2%
3979215 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 64.0 5.91e-01 75.6% 61.8%
5033202 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 76.0 5.98e-01 95.6% 52.2%
5029686 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.88 69.0 5.74e-01 84.4% 52.0%
2081534 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.88 75.0 6.39e-01 93.3% 62.9%
5012232 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.87 76.0 7.10e-01 97.8% 85.5%
3951746 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.87 76.0 6.36e-01 95.6% 58.9%
5074942 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.87 69.0 5.76e-01 86.7% 82.7%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.87 68.0 5.65e-01 84.4% 50.7%
3955892 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.87 71.0 6.91e-01 91.1% 84.0%
4980865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.85 75.0 6.09e-01 97.8% 60.0%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.84 74.0 6.88e-01 95.6% 83.6%
5050855 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 69.0 6.49e-01 93.3% 78.2%
5043074 65.1.1.13 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › TatD_DNase 0.82 60.0 4.18e-01 77.8% 25.9%
4946062 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 72.0 7.03e-01 100.0% 90.0%
2625223 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.82 72.0 6.71e-01 97.8% 83.6%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 70.0 6.55e-01 95.6% 78.2%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 66.0 5.62e-01 93.3% 58.7%
3937183 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 63.0 4.39e-01 86.7% 39.3%
3300593 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 53.0 5.04e-01 80.0% 60.0%
5064868 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.77 57.0 4.61e-01 82.2% 43.3%
3730715 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.10e-01 80.0% 63.6%
3646563 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.73 58.0 4.46e-01 91.1% 42.7%
5028248 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.73 55.0 5.33e-01 82.2% 76.0%
3807164 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.73 57.0 5.42e-01 88.9% 76.4%
3507722 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.71 58.0 4.65e-01 95.6% 64.2%
3959362 101.1.1.531 ↗ alpha arrays › HTH › HTH › Three-helical HTH › WS_DGAT_cat 0.68 62.0 4.21e-01 100.0% 40.0%
3707503 101.1.10.20 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 0.68 46.0 3.42e-01 71.1% 27.2%
5069760 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 53.0 4.93e-01 88.9% 80.0%
3897595 103.1.1.22 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl 0.68 48.0 4.32e-01 75.6% 81.5%
4023138 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.66 58.0 3.55e-01 100.0% 33.1%
None — 0.66 60.0 4.86e-01 100.0% 72.5%
4561787 6146.2.1.1 ↗ a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C 0.63 52.0 4.12e-01 93.3% 57.9%
1019405 101.1.18.1 ↗ alpha arrays › HTH › HTH › HTH domain in DNA polymerase accessory protein 62 › Phage_clamp_A 0.63 45.0 3.91e-01 80.0% 46.7%
4915831 6146.2.1.1 ↗ a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C 0.60 51.0 4.26e-01 91.1% 71.4%
4140969 102.1.1.38 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N 0.59 41.0 3.62e-01 75.6% 57.1%
5078800 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.58 48.0 3.44e-01 97.8% 71.3%
1844315 210.1.6.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.58 47.0 2.87e-01 93.3% 48.9%
1167824 2004.1.1.188 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 0.54 39.0 3.78e-01 75.6% 80.0%
3836454 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.53 46.0 4.18e-01 97.8% 98.3%