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IMGVR_UViG_2061766007_001514-2061766007-_HiSeq_18404570

Arc-Vir

IMGVR_UViG_2061766007_001514-2061766007-_HiSeq_18404570

Identity

Kingdom:
archaea

Quality

82.6 mean pLDDT

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-77
PDB
Domain cluster: rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00096__D70-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 61.0 9.00e-17 61.8% 100.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.80 74.0 6.57e-01 100.0% 82.1%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.71 63.0 4.89e-01 98.7% 69.1%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.62 52.0 5.07e-01 90.8% 83.1%
4bbyA02 3.30.160.650 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 30.0 3.63e-01 76.3% 79.5%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.56 47.0 3.84e-01 92.1% 60.6%
1djxA02 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 42.0 2.84e-01 84.2% 33.9%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 30.0 3.38e-01 84.2% 74.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266965 378.1.2.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.88 72.0 7.71e-01 86.8% 100.0%
5053631 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.83 72.0 6.22e-01 90.8% 91.8%
3539740 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.83 78.0 6.42e-01 100.0% 83.2%
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.83 77.0 6.58e-01 100.0% 82.6%
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.80 75.0 6.49e-01 100.0% 86.4%
4303143 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.72 48.0 4.63e-01 82.9% 61.2%
89916 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 63.0 4.90e-01 98.7% 69.1%
8233 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.71 63.0 4.89e-01 98.7% 69.1%
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 51.0 5.20e-01 81.6% 80.0%
3695527 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.63 55.0 4.77e-01 98.7% 83.3%
3218708 378.1.2.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH 0.63 45.0 4.63e-01 76.3% 100.0%
2323913 378.1.1.24 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DNase_NucA_NucB 0.63 42.0 3.77e-01 86.8% 48.6%
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.62 48.0 5.19e-01 82.9% 95.4%
2462317 4205.1.1.2 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › GAD-like,T6SS_Tdi1_C 0.62 49.0 3.49e-01 85.5% 43.0%
5049537 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.61 49.0 4.59e-01 90.8% 69.1%
185780 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.61 52.0 4.75e-01 90.8% 72.2%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.61 47.0 4.69e-01 84.2% 86.3%
3440476 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.59 45.0 3.91e-01 82.9% 65.5%
2485694 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.58 48.0 3.94e-01 88.2% 54.5%
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.57 47.0 4.54e-01 90.8% 78.8%
4193378 2484.1.1.5 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.51 36.0 2.95e-01 75.0% 86.9%
3742919 2484.1.1.176 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 0.50 39.0 2.52e-01 89.5% 74.8%
D2 high residues 101-167
PDB
Domain cluster: rep: IMGVR_UViG_3300018475_002962-3300018475-Ga0187907_101087273__D298-359