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IMGVR_UViG_2084038019_000005-2084038019-ADL5mRS1u_00222050

Arc-Vir

IMGVR_UViG_2084038019_000005-2084038019-ADL5mRS1u_00222050

Identity

Kingdom:
archaea

Quality

85.5 mean pLDDT

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-210
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18906.6 best Phage_tube_2 37.0 3.90e-09 93.9% 50.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 54.0 5.81e-01 94.4% 84.6%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.74 55.0 5.82e-01 94.4% 85.2%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 53.0 5.62e-01 94.4% 86.3%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 45.0 5.15e-01 72.8% 94.2%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 39.0 4.29e-01 100.0% 79.6%
2kdyA01 2.60.40.1980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 29.0 3.17e-01 97.2% 54.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.51 36.0 4.05e-01 95.0% 94.1%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.86 78.0 6.62e-01 97.8% 62.2%
4140243 1.1.5.82 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.84 53.0 6.65e-01 76.1% 100.0%
4954552 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 61.0 6.50e-01 75.6% 100.0%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 57.0 6.68e-01 93.9% 100.0%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.80 62.0 6.84e-01 80.0% 97.9%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.80 61.0 6.79e-01 77.8% 100.0%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.79 60.0 6.75e-01 80.0% 100.0%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.79 51.0 6.10e-01 93.3% 92.9%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.78 62.0 6.81e-01 82.2% 100.0%
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 60.0 6.45e-01 80.0% 99.4%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 59.0 6.33e-01 77.8% 99.4%
2471637 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.77 60.0 6.53e-01 79.4% 99.3%
4514734 1.1.13.42 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Tail_tube 0.77 47.0 5.98e-01 90.0% 100.0%
3942828 1.1.13.39 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.76 57.0 6.33e-01 77.8% 100.0%
5080512 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 70.0 5.64e-01 98.9% 56.1%
4954551 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 51.0 5.94e-01 74.4% 93.3%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.74 58.0 6.28e-01 80.6% 100.0%
2595159 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.74 55.0 5.74e-01 75.6% 84.3%
80 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.74 55.0 5.85e-01 94.4% 85.0%
136185 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.74 55.0 5.82e-01 94.4% 85.2%
3943316 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 61.0 6.45e-01 98.9% 98.1%
3265120 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 52.0 5.35e-01 75.6% 85.1%
3502370 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.68 55.0 5.83e-01 94.4% 94.4%
3964955 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 58.0 6.14e-01 93.9% 100.0%
3943681 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.67 47.0 5.16e-01 71.1% 98.7%
4957562 1.1.13.76 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 0.66 40.0 5.11e-01 92.2% 100.0%
5001274 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 33.0 3.93e-01 97.2% 85.4%
4118093 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.53 39.0 4.19e-01 99.4% 88.4%
4220790 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 31.0 3.79e-01 96.7% 93.0%
5076442 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.52 25.0 3.60e-01 70.0% 98.8%
5001271 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 30.0 3.57e-01 96.1% 82.3%