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IMGVR_UViG_2140918017_000037-2140918017-ADL24m8uC_00742530

Arc-Vir

IMGVR_UViG_2140918017_000037-2140918017-ADL24m8uC_00742530

Quality

80.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 174-242
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 54.0 5.26e-01 100.0% 72.4%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.71 55.0 5.47e-01 100.0% 81.7%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.69 64.0 5.91e-01 100.0% 96.5%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 53.0 5.06e-01 100.0% 73.4%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.67 59.0 5.59e-01 100.0% 98.8%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.66 47.0 4.91e-01 100.0% 86.7%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.65 58.0 4.01e-01 100.0% 30.7%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.65 56.0 3.76e-01 100.0% 78.9%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 48.0 4.33e-01 100.0% 58.9%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 54.0 4.54e-01 100.0% 54.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 52.0 4.53e-01 100.0% 60.6%
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 4.17e-01 100.0% 54.5%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.61 52.0 4.11e-01 98.6% 63.8%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 4.49e-01 98.6% 100.0%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.58 52.0 4.89e-01 100.0% 83.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 43.0 3.98e-01 97.1% 62.0%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 46.0 3.56e-01 95.7% 36.2%
1guiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 52.0 3.96e-01 100.0% 52.3%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 41.0 3.18e-01 82.6% 34.0%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.57 45.0 3.98e-01 100.0% 58.1%
3e1uA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 46.0 3.54e-01 95.7% 38.0%
1fnoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 48.0 4.18e-01 97.1% 100.0%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.57 40.0 3.00e-01 72.5% 35.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 40.0 3.75e-01 98.6% 58.5%
2yjlA00 2.60.40.2990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.57e-01 100.0% 50.9%
6a6yA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.55 42.0 3.29e-01 82.6% 86.8%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 39.0 3.04e-01 97.1% 32.7%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 49.0 3.93e-01 100.0% 56.6%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.63e-01 97.1% 53.7%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.78e-01 100.0% 63.7%
1pfoA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.54 47.0 3.54e-01 100.0% 38.3%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 36.0 2.76e-01 72.5% 73.0%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 3.88e-01 100.0% 62.2%
7zubC01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 46.0 3.79e-01 100.0% 79.4%
6i0iA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.53 46.0 3.99e-01 98.6% 76.9%
1pgw200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 2.96e-01 100.0% 33.0%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.53 30.0 2.68e-01 79.7% 38.4%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.91e-01 94.2% 83.8%
4liqE05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.86e-01 97.1% 66.0%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 36.0 3.03e-01 82.6% 40.5%
3kwlA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.52 45.0 4.04e-01 98.6% 77.3%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.52 40.0 2.78e-01 85.5% 55.8%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.59e-01 97.1% 59.4%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.51 39.0 3.17e-01 98.6% 41.5%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 39.0 2.86e-01 84.1% 47.5%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 37.0 3.10e-01 100.0% 42.5%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 40.0 3.52e-01 98.6% 55.6%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.50 45.0 3.37e-01 100.0% 44.8%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.44e-01 98.6% 70.8%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 43.0 3.50e-01 98.6% 75.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.76 59.0 6.09e-01 100.0% 87.7%
3551719 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 55.0 5.43e-01 100.0% 77.3%
4212121 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.70 53.0 4.36e-01 100.0% 45.5%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 54.0 5.72e-01 100.0% 96.7%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.69 53.0 5.28e-01 100.0% 81.4%
5010290 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.68 63.0 5.73e-01 100.0% 91.1%
3732370 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 50.0 5.29e-01 100.0% 90.0%
4942818 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 55.0 4.47e-01 100.0% 46.4%
3820644 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.66 58.0 4.62e-01 100.0% 51.0%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 51.0 5.25e-01 100.0% 89.2%
4947546 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.66 60.0 5.57e-01 100.0% 97.6%
2106284 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 51.0 5.20e-01 100.0% 89.6%
4642338 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.64 46.0 5.10e-01 98.6% 100.0%
3939070 11.1.1.1173 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7757 0.63 49.0 4.06e-01 100.0% 47.2%
3590783 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.62 51.0 4.10e-01 100.0% 44.8%
3736176 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 55.0 4.43e-01 100.0% 73.3%
3634674 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.61 46.0 2.94e-01 81.2% 78.4%
3411669 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 4.35e-01 100.0% 58.2%
3213336 11.1.1.187 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EFF-AFF 0.60 44.0 3.89e-01 94.2% 54.0%
3929121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 3.44e-01 100.0% 41.7%
3593924 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.58 48.0 4.08e-01 100.0% 54.2%
3852865 2492.1.1.23 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 0.58 45.0 3.50e-01 98.6% 34.1%
3702051 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.58 51.0 3.72e-01 100.0% 41.5%
4325827 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 3.99e-01 94.2% 56.2%
3291916 2492.1.1.4 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 46.0 2.99e-01 88.4% 19.0%
3578087 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 4.09e-01 100.0% 72.0%
3408652 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 3.71e-01 100.0% 40.6%
3824339 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.30e-01 100.0% 35.8%
3211221 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.90e-01 98.6% 60.0%
4983643 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.55 44.0 3.91e-01 100.0% 60.0%
3248836 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 36.0 2.86e-01 81.2% 30.3%
3683470 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.54 44.0 3.17e-01 95.7% 33.0%
3931538 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.70e-01 98.6% 57.1%
3721982 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.54 45.0 4.13e-01 98.6% 100.0%
4945948 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.48e-01 98.6% 52.4%
5060187 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.58e-01 95.7% 57.0%
3282710 2492.1.1.35 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF4192 0.53 42.0 3.31e-01 91.3% 58.8%
3236419 11.1.4.63 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF870 0.53 44.0 3.74e-01 98.6% 55.7%
3333290 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 44.0 3.39e-01 100.0% 66.7%
3577596 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.52 43.0 3.58e-01 100.0% 75.9%
3230558 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 41.0 3.69e-01 100.0% 60.0%
3395613 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.52 44.0 3.43e-01 100.0% 97.6%
5030450 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 3.44e-01 95.7% 60.7%
5052711 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.51 43.0 3.54e-01 100.0% 98.6%
3491662 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 32.0 3.20e-01 100.0% 58.1%
4867161 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.51 44.0 3.45e-01 100.0% 61.9%
3181741 11.1.1.203 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.51 43.0 3.79e-01 98.6% 62.7%
3544291 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.50e-01 100.0% 48.6%
3793097 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 44.0 3.69e-01 100.0% 98.4%
3925634 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 42.0 4.26e-01 100.0% 95.7%
3331566 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.60e-01 100.0% 57.4%
3410193 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.50 43.0 3.39e-01 98.6% 63.2%
3893718 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.50 44.0 3.43e-01 100.0% 63.2%
4217014 2007.1.3.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 0.50 39.0 2.81e-01 85.5% 98.1%
4993186 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.50 39.0 3.51e-01 88.4% 98.1%
3420779 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.50 42.0 3.35e-01 100.0% 58.7%
3476915 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.55e-01 100.0% 63.1%
4942248 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 42.0 3.41e-01 98.6% 66.2%
D2 medium residues 1-91
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z4vA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 46.0 3.19e-01 82.4% 26.4%
3nuqA01 1.10.150.450 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 38.0 3.72e-01 89.0% 60.6%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.57 29.0 3.19e-01 74.7% 60.3%
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 38.0 3.23e-01 72.5% 84.5%
5cqgA03 1.10.10.2210 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 33.0 3.49e-01 90.1% 68.4%
3c7jA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.54 40.0 3.50e-01 80.2% 89.0%
8hk0A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.54 39.0 3.64e-01 78.0% 77.3%
4bj1A01 1.20.120.1650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 41.0 3.82e-01 82.4% 89.4%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 47.0 3.40e-01 97.8% 98.8%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.52 40.0 3.45e-01 97.8% 52.1%
4lmoA00 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 43.0 3.11e-01 90.1% 92.4%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 37.0 3.28e-01 92.3% 52.3%
3dteA01 1.10.10.2910 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 39.0 3.65e-01 83.5% 72.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233477 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 47.0 5.15e-01 82.4% 100.0%
3592239 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.64 42.0 4.62e-01 75.8% 87.1%
3595326 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 42.0 4.59e-01 76.9% 88.6%
5011995 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.57 40.0 3.87e-01 71.4% 64.0%
3264752 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.57 50.0 4.31e-01 100.0% 94.5%
3458091 632.1.1.13 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N 0.56 46.0 4.79e-01 97.8% 92.9%
3833668 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.55 40.0 3.31e-01 76.9% 89.4%
3575635 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.55 45.0 4.58e-01 98.9% 88.9%
3465280 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 42.0 4.44e-01 96.7% 93.8%
5060019 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 41.0 4.30e-01 98.9% 89.4%
3945962 4338.1.1.1 alpha complex topology › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › PSPTO4464 N-terminal domain-like › DUF615 0.53 43.0 4.42e-01 98.9% 98.8%
3756888 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.53 46.0 3.91e-01 100.0% 73.8%
4612014 531.1.1.2 alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C+FliG_M+FliG_N 0.51 46.0 3.20e-01 100.0% 32.3%
3852543 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 39.0 3.69e-01 83.5% 100.0%
5012657 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 42.0 4.14e-01 100.0% 85.3%
3620978 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 29.0 2.06e-01 81.3% 15.6%
3597496 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.50 39.0 3.09e-01 92.3% 40.5%
D3 medium residues 92-173
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.78 54.0 4.77e-01 72.0% 75.0%
2m63A00 1.25.40.780 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.77 55.0 4.45e-01 93.9% 39.5%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.70 51.0 4.36e-01 78.0% 62.6%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.69 51.0 4.47e-01 78.0% 82.4%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 53.0 4.58e-01 97.6% 53.5%
7zcvA02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 51.0 3.82e-01 95.1% 31.4%
4rg9B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 52.0 4.13e-01 92.7% 40.7%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 55.0 4.23e-01 91.5% 52.1%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.67 59.0 4.82e-01 100.0% 82.7%
1n95A00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.66 60.0 4.02e-01 100.0% 28.8%
6wb9201 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 60.0 4.07e-01 100.0% 37.0%
2xq0A03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.66 52.0 4.29e-01 87.8% 89.2%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.65 58.0 4.73e-01 100.0% 55.2%
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 55.0 4.80e-01 96.3% 70.5%
3l09A01 1.20.58.1460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 47.0 4.44e-01 78.0% 88.8%
4gpkF02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 56.0 4.02e-01 100.0% 46.3%
3jckC00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 52.0 3.46e-01 97.6% 23.5%
4rg6A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 53.0 4.59e-01 97.6% 76.7%
6igxD01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.61 52.0 3.79e-01 98.8% 35.1%
3au4A01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.61 50.0 3.95e-01 96.3% 45.9%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 51.0 4.18e-01 97.6% 50.6%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.59 49.0 4.08e-01 92.7% 60.7%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 41.0 3.57e-01 76.8% 60.9%
3ut4A00 1.25.40.750 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 0.57 45.0 4.02e-01 100.0% 58.6%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.56 47.0 3.89e-01 96.3% 65.4%
1wvuA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 39.0 3.29e-01 75.6% 63.5%
3u66A00 1.25.40.590 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU 0.55 46.0 3.77e-01 96.3% 64.3%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.54 44.0 3.37e-01 90.2% 88.9%
3i2wA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 38.0 2.71e-01 73.2% 80.2%
3vldA02 1.25.40.580 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 3.70e-01 93.9% 75.8%
5swcD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.54 41.0 3.10e-01 82.9% 78.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012105 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.79 71.0 6.16e-01 100.0% 97.6%
4947944 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 64.0 4.21e-01 87.8% 56.5%
5001078 633.2.1.0 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.77 52.0 5.00e-01 70.7% 68.4%
3931763 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 5.59e-01 98.8% 84.3%
3687448 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 4.52e-01 98.8% 36.3%
3567070 5000.3.1.1 alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.70 52.0 3.88e-01 79.3% 35.1%
3400367 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 60.0 4.84e-01 92.7% 55.3%
3950687 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 5.28e-01 96.3% 68.7%
5047254 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 61.0 4.39e-01 100.0% 39.6%
3962147 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 59.0 4.00e-01 96.3% 27.6%
3389963 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.67 49.0 5.29e-01 78.0% 92.9%
3289148 109.4.1.194 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 0.67 60.0 4.35e-01 100.0% 42.7%
4244512 109.4.1.146 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load 0.67 58.0 4.71e-01 100.0% 59.4%
3788426 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 59.0 3.52e-01 98.8% 29.2%
3938085 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 57.0 3.64e-01 95.1% 40.8%
3168248 109.4.1.598 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mak10 0.66 58.0 3.85e-01 98.8% 52.3%
2875331 109.4.1.275 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C 0.65 55.0 4.05e-01 100.0% 35.2%
3885130 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 56.0 4.00e-01 100.0% 66.0%
3995294 1065.1.1.0 alpha bundles › SPX domain › SPX domain › SPX domain 0.65 48.0 4.15e-01 78.0% 81.6%
3781461 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 3.70e-01 96.3% 36.1%
3926228 206.1.1.28 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.64 48.0 3.19e-01 80.5% 48.4%
3167851 109.4.1.30 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT 0.64 52.0 4.24e-01 100.0% 46.3%
3893576 109.4.1.1126 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_SYO1 0.64 56.0 3.31e-01 100.0% 14.0%
3695480 109.4.1.1666 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 0.64 54.0 4.09e-01 100.0% 38.0%
4546706 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.64 55.0 4.02e-01 100.0% 35.5%
3343995 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 55.0 4.27e-01 98.8% 56.8%
3899910 109.4.1.557 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC7_N 0.64 49.0 4.21e-01 97.6% 51.1%
3414266 109.4.1.880 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_6th 0.63 55.0 4.02e-01 100.0% 71.2%
3779354 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 53.0 3.87e-01 97.6% 47.4%
4227111 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.97e-01 100.0% 43.7%
3806548 109.4.1.1718 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.60 51.0 4.74e-01 97.6% 96.2%
3178010 109.4.1.526 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc 0.58 49.0 3.53e-01 100.0% 58.2%
3270853 109.4.1.73 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Uso1_p115_head 0.57 47.0 3.33e-01 100.0% 37.2%