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IMGVR_UViG_2264265211_000001-2264265211-2264764725

Arc-Vir

IMGVR_UViG_2264265211_000001-2264265211-2264764725

Identity

Kingdom:
archaea

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-44
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.75 57.0 4.70e-01 100.0% 44.7%
4obmA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.73 60.0 3.67e-01 97.4% 85.3%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.71 50.0 3.62e-01 76.9% 33.9%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 45.0 2.96e-01 71.8% 16.1%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.67 44.0 3.39e-01 71.8% 28.3%
1oi2A02 3.30.1180.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 0.66 47.0 3.04e-01 74.4% 30.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 43.0 2.96e-01 97.4% 19.1%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.65 51.0 4.57e-01 94.9% 66.7%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 50.0 3.40e-01 87.2% 43.2%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.65 46.0 3.54e-01 87.2% 33.3%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.61 49.0 3.90e-01 100.0% 51.0%
2pptA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.61 44.0 4.50e-01 97.4% 83.8%
1fx2A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 50.0 3.14e-01 100.0% 37.0%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.60 43.0 4.43e-01 97.4% 86.1%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.60 44.0 2.61e-01 82.1% 13.0%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.60 41.0 3.83e-01 100.0% 56.9%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 40.0 2.71e-01 74.4% 15.9%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 49.0 3.11e-01 100.0% 36.4%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.59 49.0 3.79e-01 100.0% 39.0%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 40.0 2.94e-01 89.7% 24.3%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 41.0 2.45e-01 76.9% 15.1%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 3.28e-01 100.0% 28.7%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 3.19e-01 97.4% 96.2%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 3.45e-01 92.3% 49.5%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.58 48.0 3.83e-01 97.4% 45.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 44.0 3.34e-01 87.2% 80.8%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 45.0 3.09e-01 97.4% 48.2%
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 44.0 3.10e-01 89.7% 56.7%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 46.0 3.00e-01 100.0% 50.7%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 47.0 2.72e-01 94.9% 94.7%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.57 44.0 2.88e-01 100.0% 35.6%
4f9zA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 43.0 3.35e-01 97.4% 35.9%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.29e-01 97.4% 72.4%
5cygB00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 42.0 2.64e-01 100.0% 83.9%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.99e-01 97.4% 95.2%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 41.0 2.78e-01 100.0% 35.7%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 37.0 2.69e-01 76.9% 38.2%
3u3pA01 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.54 42.0 3.45e-01 97.4% 44.6%
3zf8A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 43.0 2.58e-01 89.7% 30.6%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 46.0 2.91e-01 100.0% 46.7%
3bwnD01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 47.0 3.17e-01 100.0% 69.4%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 43.0 2.99e-01 89.7% 47.6%
3rhtA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 43.0 2.71e-01 97.4% 94.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 41.0 3.79e-01 97.4% 70.2%
3bvxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 43.0 3.01e-01 100.0% 51.0%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.07e-01 89.7% 34.7%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.52 42.0 2.70e-01 97.4% 20.6%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 45.0 2.62e-01 100.0% 16.7%
5yvxA00 3.30.40.100 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.51 40.0 3.65e-01 94.9% 66.7%
2j42A02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.51 38.0 2.67e-01 100.0% 49.2%
4kdcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.49e-01 84.6% 49.8%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.51 37.0 2.72e-01 100.0% 24.5%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 2.60e-01 94.9% 67.2%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 2.91e-01 100.0% 29.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 59.0 5.31e-01 89.7% 83.6%
3221981 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 62.0 4.74e-01 100.0% 45.6%
5024386 2484.4.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.70 54.0 4.07e-01 87.2% 40.0%
3767166 79.1.1.31 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › ITI_HC_C 0.68 49.0 3.71e-01 79.5% 32.6%
5076347 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.67 48.0 3.81e-01 79.5% 56.5%
3703262 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.67 58.0 4.25e-01 100.0% 73.3%
5051574 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 56.0 4.92e-01 97.4% 75.0%
3519317 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.66 47.0 2.80e-01 76.9% 60.7%
5045331 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 54.0 4.81e-01 97.4% 100.0%
4991835 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 54.0 5.07e-01 97.4% 90.0%
3984313 3227.1.1.0 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC 0.65 53.0 3.16e-01 100.0% 44.3%
3989430 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.65 50.0 3.64e-01 100.0% 28.6%
4451287 3227.1.1.1 ↗ alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.64 52.0 3.09e-01 100.0% 41.1%
3777032 5054.1.1.11 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › SK_channel 0.63 51.0 3.17e-01 92.3% 45.9%
4980177 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.62 40.0 2.90e-01 94.9% 21.7%
3586726 5.1.4.421 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.62 52.0 3.15e-01 100.0% 20.0%
4029229 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 46.0 4.35e-01 87.2% 78.0%
3740226 5051.1.1.7 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp 0.61 49.0 2.76e-01 89.7% 45.2%
4025629 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.61 50.0 3.96e-01 97.4% 47.1%
5006512 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.60 41.0 3.58e-01 100.0% 46.7%
3918540 386.1.1.281 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27082 0.60 41.0 4.15e-01 94.9% 75.0%
3627712 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.59 40.0 2.22e-01 71.8% 16.9%
3946510 803.1.1.0 ↗ a+b duplicates or obligate multimers › Hypothetical protein YoaG › Hypothetical protein YoaG › Hypothetical protein YoaG 0.59 45.0 4.40e-01 94.9% 88.9%
5018200 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.59 50.0 2.80e-01 100.0% 78.6%
3899209 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 47.0 3.08e-01 94.9% 48.7%
3656521 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 43.0 3.37e-01 87.2% 46.3%
5049116 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 45.0 3.06e-01 97.4% 26.7%
5011468 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 41.0 2.89e-01 100.0% 24.8%
4242930 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.56 44.0 3.61e-01 100.0% 45.6%
3892155 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.56 42.0 2.28e-01 82.1% 6.6%
4403587 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.56 45.0 3.69e-01 100.0% 45.9%
3308207 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.56 46.0 2.85e-01 100.0% 49.2%
3199442 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 44.0 2.64e-01 92.3% 21.9%
3371576 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.59e-01 100.0% 12.4%
4927429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 4.28e-01 97.4% 90.0%
4239635 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 42.0 2.77e-01 100.0% 20.6%
4303957 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.54 40.0 2.74e-01 97.4% 20.6%
3929788 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.53 35.0 2.97e-01 79.5% 32.5%
3330041 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.53 45.0 2.97e-01 94.9% 74.8%
3604748 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 2.90e-01 100.0% 19.1%
3710084 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.53 43.0 2.91e-01 97.4% 42.9%
4325633 327.11.2.38 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_1 0.52 44.0 3.87e-01 100.0% 63.3%
3497680 5054.1.1.63 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.52 43.0 2.53e-01 100.0% 16.1%
5060938 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.97e-01 97.4% 100.0%
3499344 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.52 44.0 2.37e-01 97.4% 16.1%
3661784 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 43.0 2.53e-01 94.9% 19.1%
4912929 327.11.2.13 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.50 43.0 3.21e-01 100.0% 42.1%
5012106 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.50 43.0 2.96e-01 94.9% 36.3%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.50 41.0 2.70e-01 89.7% 55.3%