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IMGVR_UViG_2502082094_000001-2502082094-2502095152

Arc-Vir

IMGVR_UViG_2502082094_000001-2502082094-2502095152

Identity

Kingdom:
archaea

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-143
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05658.20 best YadA_head 15.5 2.50e-02 25.2% 100.0%
PF05658.20 YadA_head 16.0 1.80e-02 16.8% 55.6%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6lD00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.94 91.0 7.74e-01 100.0% 68.4%
1p9hA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.93 90.0 7.31e-01 100.0% 65.9%
3ntnB01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.93 89.0 7.48e-01 100.0% 88.5%
3wp8A02 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.93 89.0 7.72e-01 100.0% 86.2%
2xqhA01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.90 85.0 7.78e-01 99.1% 80.7%
3ultA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.88 82.0 8.04e-01 99.1% 94.7%
2iu8C02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.81 75.0 5.92e-01 100.0% 82.5%
2wlgB00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.81 75.0 5.86e-01 99.1% 78.9%
3fs8A01 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.78 73.0 5.64e-01 100.0% 79.2%
3jqyC00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.78 71.0 5.59e-01 100.0% 75.9%
7d6c401 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.76 53.0 5.50e-01 72.0% 100.0%
3c8vC03 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.76 70.0 6.04e-01 100.0% 83.1%
1kgqA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.73 67.0 5.67e-01 100.0% 92.4%
2yo0A01 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.70 63.0 5.36e-01 93.5% 73.0%
5l6vE02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.64 53.0 4.91e-01 86.9% 87.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3984087 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.96 92.0 7.84e-01 99.1% 67.7%
3965736 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.96 93.0 7.17e-01 100.0% 64.9%
4101253 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.96 93.0 7.58e-01 100.0% 63.4%
4593120 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.95 93.0 7.57e-01 100.0% 67.4%
4597136 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.95 93.0 5.89e-01 100.0% 34.2%
3984088 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.95 92.0 7.06e-01 100.0% 63.3%
2880595 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.95 92.0 6.19e-01 100.0% 35.9%
4394203 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.95 92.0 6.16e-01 100.0% 37.0%
3982518 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.95 92.0 7.75e-01 100.0% 73.8%
5055775 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.94 91.0 6.79e-01 100.0% 54.3%
5033305 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.94 91.0 7.71e-01 100.0% 77.5%
1834008 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.94 91.0 7.74e-01 100.0% 68.4%
4225149 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.94 91.0 6.94e-01 100.0% 56.2%
4883110 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.93 89.0 6.90e-01 99.1% 55.3%
4775891 208.2.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.93 89.0 7.54e-01 99.1% 69.6%
185868 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.93 90.0 7.82e-01 100.0% 78.7%
4572690 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.93 88.0 8.71e-01 99.1% 95.5%
1503827 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.93 89.0 6.60e-01 100.0% 61.6%
3965420 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.91 82.0 7.74e-01 94.4% 82.4%
1146565 208.7.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › LbR_Ice_bind 0.88 82.0 8.06e-01 98.1% 93.9%
3965888 208.2.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head 0.84 82.0 6.36e-01 100.0% 79.0%
3841938 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.83 75.0 5.94e-01 99.1% 50.0%
4570556 208.1.1.20 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, GMPPB_C 0.82 77.0 5.71e-01 100.0% 76.4%
4579400 208.1.1.6 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2 0.82 76.0 6.01e-01 99.1% 74.6%
4155777 208.1.1.48 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2, Hexapep_GlmU 0.82 75.0 5.91e-01 98.1% 61.4%
4362605 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.82 76.0 5.60e-01 99.1% 61.2%
5028062 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.82 75.0 6.04e-01 98.1% 78.9%
3189969 208.2.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain 0.81 77.0 6.82e-01 100.0% 74.5%
5000450 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.81 75.0 6.13e-01 99.1% 82.7%
4978838 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.81 74.0 6.09e-01 99.1% 83.8%
5075151 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.80 74.0 6.20e-01 99.1% 88.6%
4968776 208.1.1.17 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C 0.78 55.0 5.94e-01 72.0% 100.0%
4996884 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.78 61.0 6.16e-01 81.3% 98.1%
5055476 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.77 72.0 6.05e-01 100.0% 94.1%
3685996 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.76 71.0 5.73e-01 100.0% 77.4%
1933275 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.76 70.0 5.56e-01 100.0% 73.5%
3673422 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.74 68.0 6.72e-01 97.2% 100.0%
3737403 208.1.1.16 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B 0.71 66.0 6.42e-01 100.0% 94.9%
4673672 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.70 64.0 5.00e-01 95.3% 55.6%
3978492 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.69 64.0 4.68e-01 96.3% 47.6%
3274321 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.69 63.0 5.39e-01 100.0% 91.8%
4673671 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.68 57.0 5.25e-01 86.0% 89.2%
5027580 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.68 58.0 5.35e-01 92.5% 92.5%
D2 medium residues 398-449
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 48.0 3.53e-01 73.1% 25.2%
4o5fA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 47.0 3.48e-01 76.9% 26.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.70 49.0 3.91e-01 78.8% 35.8%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 45.0 2.92e-01 78.8% 14.3%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 46.0 3.41e-01 78.8% 26.4%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 44.0 3.51e-01 76.9% 33.0%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 46.0 3.11e-01 76.9% 20.0%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.65 47.0 4.27e-01 76.9% 69.0%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.65 43.0 3.46e-01 76.9% 33.6%
7odhL01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.64 49.0 2.82e-01 84.6% 11.2%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 45.0 3.29e-01 75.0% 63.6%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 3.38e-01 73.1% 33.1%
3vrdB03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.63 45.0 4.06e-01 76.9% 70.3%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 46.0 3.81e-01 82.7% 43.9%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 3.86e-01 96.2% 72.0%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.61 46.0 3.01e-01 82.7% 21.3%
1h7sA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 48.0 3.29e-01 88.5% 33.2%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 3.73e-01 94.2% 67.6%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.61 48.0 3.61e-01 90.4% 63.8%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.01e-01 92.3% 19.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.61 47.0 4.15e-01 88.5% 62.5%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.79e-01 96.2% 71.9%
4hizA04 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.61 49.0 3.53e-01 92.3% 32.5%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 47.0 3.93e-01 90.4% 54.0%
1t3qC03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.60 48.0 3.82e-01 88.5% 50.5%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 49.0 3.75e-01 90.4% 41.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 3.61e-01 92.3% 35.3%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.71e-01 96.2% 68.6%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.74e-01 96.2% 70.1%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 49.0 3.60e-01 96.2% 39.7%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 3.70e-01 88.5% 85.1%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 48.0 3.80e-01 96.2% 61.2%
7p7cC02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.59 49.0 3.05e-01 100.0% 87.8%
3ju4A04 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.59 48.0 3.49e-01 92.3% 33.1%
3mn8B02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.59 42.0 3.59e-01 75.0% 62.7%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.54e-01 94.2% 62.0%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.69e-01 96.2% 70.5%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.24e-01 92.3% 31.8%
3gw6F01 4.10.1090.10 Few Secondary Structures › Irregular › Endosialidase, domain 4 › Endosialidase, domain 4 0.58 45.0 3.79e-01 88.5% 51.6%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 42.0 3.66e-01 88.5% 49.4%
1y9kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 41.0 3.31e-01 78.8% 37.2%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.57 45.0 3.69e-01 90.4% 52.3%
2xp1A02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 3.98e-01 90.4% 58.7%
4zohB03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 43.0 3.56e-01 86.5% 53.9%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.21e-01 90.4% 76.8%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 42.0 2.88e-01 88.5% 40.2%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 46.0 3.44e-01 94.2% 72.2%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.54 40.0 3.17e-01 84.6% 76.8%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.54 39.0 2.92e-01 80.8% 28.5%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 2.83e-01 75.0% 42.4%
2wsaA00 3.40.630.170 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.53 42.0 2.55e-01 92.3% 23.4%
6p3lA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.56e-01 98.1% 95.7%
1y79101 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.53 38.0 2.32e-01 80.8% 10.3%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.38e-01 84.6% 71.0%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.73e-01 90.4% 19.9%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 2.75e-01 96.2% 25.2%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.36e-01 100.0% 81.4%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.06e-01 90.4% 41.8%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 40.0 2.53e-01 90.4% 24.8%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.05e-01 98.1% 56.8%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.24e-01 78.8% 96.6%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 35.0 3.01e-01 82.7% 38.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.47e-01 76.9% 77.8%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3698724 245.2.1.0 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.71 51.0 3.75e-01 86.5% 28.6%
3789513 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.70 54.0 3.54e-01 86.5% 32.6%
4959054 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 49.0 4.23e-01 76.9% 68.2%
5081301 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.69 51.0 3.08e-01 82.7% 17.2%
3435087 2484.1.1.114 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.69 47.0 3.67e-01 76.9% 32.2%
1322782 2484.5.1.1 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.69 47.0 3.50e-01 80.8% 28.0%
5036649 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.69 50.0 4.46e-01 78.8% 66.7%
4869677 4967.1.1.30 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RVT_connect 0.69 44.0 4.51e-01 75.0% 68.0%
4943226 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.68 50.0 4.36e-01 78.8% 62.5%
3271756 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 51.0 3.60e-01 84.6% 25.1%
1286823 244.4.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 0.66 49.0 4.97e-01 78.8% 78.4%
3366565 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.66 46.0 3.67e-01 76.9% 35.5%
3337433 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.66 47.0 4.13e-01 78.8% 50.0%
2104079 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.66 47.0 5.02e-01 78.8% 88.9%
1760264 244.4.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 0.66 50.0 4.26e-01 82.7% 67.8%
3257459 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.66 46.0 3.84e-01 76.9% 49.0%
4944026 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 50.0 4.76e-01 86.5% 73.4%
4958378 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 45.0 3.92e-01 75.0% 68.2%
3830643 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.65 46.0 3.88e-01 80.8% 44.4%
5022780 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 46.0 3.81e-01 78.8% 68.0%
3611339 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 43.0 3.69e-01 76.9% 42.4%
5076507 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 46.0 3.40e-01 84.6% 27.7%
4170578 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.64 46.0 3.90e-01 78.8% 54.4%
3758614 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 2.83e-01 96.2% 8.4%
3999888 4018.1.1.0 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.63 50.0 3.84e-01 92.3% 86.2%
3732634 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.63 52.0 2.99e-01 94.2% 15.5%
3588002 298.1.1.20 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › YceM-like_C 0.62 44.0 3.05e-01 80.8% 21.1%
5028156 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.62 42.0 3.66e-01 73.1% 42.2%
3970982 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.62 51.0 4.65e-01 92.3% 75.7%
2617497 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 43.0 3.40e-01 75.0% 45.2%
5070799 5.1.5.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FG-GAP_3 0.62 49.0 2.92e-01 92.3% 24.4%
2251 79.1.1.5 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › End_tail_spike 0.61 52.0 3.83e-01 100.0% 36.0%
3809146 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 43.0 3.67e-01 78.8% 43.3%
1349783 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.61 46.0 3.81e-01 82.7% 43.9%
5072842 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 44.0 3.66e-01 84.6% 41.0%
3514632 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.61 49.0 3.03e-01 96.2% 92.6%
140148 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.61 49.0 3.62e-01 94.2% 60.6%
3748485 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.61 50.0 3.49e-01 98.1% 52.8%
3730478 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.61 43.0 3.15e-01 78.8% 25.8%
3274536 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.61 44.0 3.62e-01 78.8% 69.0%
1140884 79.1.1.5 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › End_tail_spike 0.61 49.0 3.55e-01 92.3% 33.3%
5027399 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.60 44.0 3.83e-01 78.8% 70.0%
185414 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.60 48.0 3.62e-01 92.3% 35.5%
3546198 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.60 49.0 2.99e-01 92.3% 18.6%
3639845 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.60 46.0 3.77e-01 90.4% 48.2%
3601202 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.59 47.0 2.94e-01 90.4% 41.2%
1860370 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 43.0 3.32e-01 82.7% 37.3%
3784539 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 46.0 3.71e-01 90.4% 48.2%
2132873 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.59 46.0 3.73e-01 90.4% 48.6%
3620049 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.58 47.0 2.97e-01 94.2% 41.6%
5030013 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.57 44.0 2.64e-01 90.4% 23.5%
4929844 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.57 40.0 3.40e-01 75.0% 56.7%
1171960 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.56 43.0 3.85e-01 86.5% 85.9%
4997648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 40.0 4.11e-01 80.8% 82.0%
3587151 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 41.0 3.30e-01 84.6% 37.5%
4929308 4295.1.1.0 beta barrels › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.56 42.0 3.02e-01 86.5% 69.7%
3990949 2498.1.1.6 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.56 41.0 2.62e-01 82.7% 17.1%
5008209 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.70e-01 88.5% 55.0%
3578775 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 44.0 3.38e-01 94.2% 60.4%
3281065 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.55 43.0 3.31e-01 90.4% 92.5%
3268229 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.45e-01 88.5% 64.8%
5028870 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 40.0 3.69e-01 82.7% 97.1%
3668721 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.54 41.0 3.26e-01 88.5% 91.7%
5007378 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.53 34.0 3.41e-01 73.1% 61.8%
3621725 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 41.0 3.27e-01 96.2% 55.4%
4985869 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.53 42.0 3.69e-01 98.1% 68.5%
3273270 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.68e-01 90.4% 20.4%
4159881 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.52 41.0 3.44e-01 88.5% 63.2%
3806012 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 39.0 2.46e-01 88.5% 15.0%
11089 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 35.0 2.78e-01 82.7% 28.1%
3718947 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 2.74e-01 82.7% 60.6%