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IMGVR_UViG_2502082094_000001-2502082094-2502095285

Arc-Vir

IMGVR_UViG_2502082094_000001-2502082094-2502095285

Identity

Kingdom:
archaea

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-109
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.80 55.0 6.17e-01 85.2% 92.6%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.79 56.0 6.29e-01 84.1% 97.0%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.79 54.0 6.15e-01 86.4% 96.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 33.0 3.86e-01 100.0% 61.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.71 55.0 5.33e-01 100.0% 73.7%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 38.0 3.54e-01 100.0% 43.4%
4a2aA02 3.30.1490.110 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.66 54.0 5.43e-01 85.2% 93.1%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.66 55.0 5.00e-01 100.0% 67.2%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 48.0 3.89e-01 100.0% 42.4%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 3.31e-01 100.0% 45.0%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 30.0 3.69e-01 100.0% 74.1%
3nwrA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.60 47.0 4.28e-01 85.2% 62.7%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 52.0 4.46e-01 96.6% 74.1%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 43.0 4.08e-01 83.0% 63.6%
3fk4B01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.59 45.0 4.12e-01 81.8% 63.5%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 51.0 4.30e-01 100.0% 85.7%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 51.0 4.12e-01 100.0% 59.4%
7c51A01 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.57 45.0 4.22e-01 87.5% 68.5%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.57 51.0 4.44e-01 100.0% 64.7%
1vi7A01 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.56 49.0 4.25e-01 95.5% 68.9%
5l16A01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.56 47.0 4.26e-01 95.5% 94.3%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 49.0 4.25e-01 100.0% 77.4%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 41.0 4.08e-01 98.9% 75.8%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 3.78e-01 96.6% 76.3%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.97e-01 96.6% 80.7%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 45.0 3.72e-01 96.6% 53.0%
1ea0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 45.0 2.93e-01 94.3% 21.0%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 46.0 3.25e-01 96.6% 79.9%
6u1oA02 3.30.230.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain 0.53 44.0 4.03e-01 94.3% 76.9%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.52 45.0 3.96e-01 100.0% 78.0%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 46.0 4.15e-01 100.0% 71.8%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 41.0 3.85e-01 84.1% 75.2%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.93e-01 100.0% 66.1%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 45.0 3.60e-01 100.0% 48.3%
2lfpA01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.51 44.0 3.90e-01 100.0% 75.7%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.60e-01 96.6% 64.3%
4g6vB00 3.30.70.2920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.74e-01 96.6% 70.9%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.60e-01 96.6% 68.9%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.44e-01 84.1% 61.3%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4401392 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.80 55.0 6.25e-01 85.2% 96.9%
5055700 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.78 55.0 6.07e-01 84.1% 91.4%
3969381 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.78 55.0 6.07e-01 85.2% 92.9%
4929266 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.77 54.0 5.98e-01 85.2% 92.9%
4999152 872.1.1.2 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin 0.75 54.0 5.99e-01 85.2% 95.7%
4201044 304.109.1.10 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › PF27137 0.75 61.0 5.50e-01 100.0% 64.2%
3803907 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.72 56.0 5.68e-01 83.0% 98.8%
4529819 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.69 35.0 3.02e-01 100.0% 31.9%
3964535 310.3.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO 0.69 58.0 5.26e-01 100.0% 69.6%
4041226 2484.1.1.263 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, EutA, FtsA 0.67 54.0 3.45e-01 86.4% 29.4%
3867900 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.65 53.0 4.10e-01 87.5% 48.9%
3802659 304.8.1.66 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.65 52.0 4.95e-01 98.9% 73.3%
3970827 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 53.0 5.40e-01 100.0% 90.6%
5020494 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.64 46.0 4.61e-01 87.5% 73.3%
3987555 2484.1.1.27 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA 0.63 51.0 3.85e-01 87.5% 40.0%
3972305 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 48.0 4.84e-01 97.7% 85.6%
3625682 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.60 47.0 4.12e-01 85.2% 66.7%
3483013 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.60 46.0 4.22e-01 84.1% 69.2%
3966429 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.60 48.0 4.81e-01 97.7% 85.6%
4383512 11.1.1.1268 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27154 0.60 45.0 4.49e-01 97.7% 75.5%
5040945 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.59 54.0 4.50e-01 100.0% 61.3%
3966645 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.59 53.0 4.72e-01 97.7% 71.2%
3278878 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.59 47.0 4.40e-01 85.2% 70.0%
4431984 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.59 43.0 4.53e-01 86.4% 85.0%
4808079 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.59 44.0 4.16e-01 80.7% 65.7%
3571921 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.59 52.0 3.42e-01 96.6% 56.4%
4136515 310.3.1.23 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.59 51.0 4.27e-01 100.0% 66.3%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.58 51.0 4.59e-01 98.9% 88.8%
3941902 304.124.1.7 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Minor_capsid_3 0.58 52.0 4.66e-01 100.0% 72.0%
3978573 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.57 52.0 4.93e-01 100.0% 84.8%
4889788 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 50.0 4.85e-01 100.0% 86.6%
None 0.57 52.0 4.26e-01 100.0% 56.2%
5037695 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.57 44.0 4.00e-01 86.4% 64.0%
3232018 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.56 43.0 3.65e-01 81.8% 49.0%
4560955 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 49.0 3.63e-01 96.6% 61.7%
3589403 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.56 49.0 4.49e-01 98.9% 80.8%
5073350 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.56 49.0 3.79e-01 95.5% 55.3%
3969556 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 49.0 3.90e-01 96.6% 77.7%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.56 49.0 4.32e-01 98.9% 86.5%
2468519 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 50.0 4.80e-01 100.0% 87.3%
4198414 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.56 48.0 3.60e-01 94.3% 91.6%
4877076 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.56 48.0 3.51e-01 95.5% 43.5%
4333285 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 48.0 3.54e-01 96.6% 59.2%
3601192 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 46.0 3.05e-01 94.3% 55.2%
3654098 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 48.0 3.73e-01 97.7% 67.7%
3365246 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 47.0 3.79e-01 95.5% 76.5%
3466796 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 47.0 3.77e-01 95.5% 74.3%
4027515 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 47.0 3.51e-01 95.5% 62.7%
4058368 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.54 46.0 3.48e-01 93.2% 89.8%
3933223 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.54 41.0 3.64e-01 81.8% 54.6%
3916147 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 48.0 4.00e-01 100.0% 80.6%
3349201 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.54 46.0 3.60e-01 96.6% 55.5%
5041672 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.53 42.0 3.98e-01 84.1% 75.7%
3313814 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 45.0 3.63e-01 95.5% 73.7%
3701460 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.56e-01 83.0% 68.5%
3583166 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 43.0 2.83e-01 93.2% 35.8%
3795203 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 42.0 2.97e-01 97.7% 28.3%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 39.0 3.72e-01 86.4% 67.3%
4483994 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 42.0 2.79e-01 97.7% 21.9%
None 0.50 43.0 2.76e-01 98.9% 45.1%
4019871 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 43.0 3.27e-01 95.5% 84.7%
3353115 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 42.0 3.05e-01 93.2% 57.7%
3991153 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 45.0 3.15e-01 100.0% 38.9%
3609446 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 2.71e-01 90.9% 33.7%
3717718 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 42.0 2.82e-01 93.2% 38.5%