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IMGVR_UViG_2502082094_000001-2502082094-2502095314
Arc-VirIMGVR_UViG_2502082094_000001-2502082094-2502095314
Identity
- Kingdom:
- archaea
Quality
83.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-104
Domain cluster:
rep: KM101124.1__AIM40981.1__PBI_SQUIRTY_34__00034__D24-88
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00589.28 best | Phage_integrase | 36.1 | 8.10e-09 | 97.3% | 35.5% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.79 | 65.0 | 4.87e-01 | 100.0% | 37.6% |
| 2a3vA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.79 | 62.0 | 4.42e-01 | 100.0% | 29.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028306 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 69.0 | 5.09e-01 | 100.0% | 37.2% |
| 4981966 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.75 | 65.0 | 4.68e-01 | 100.0% | 35.0% |
| 3732321 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.74 | 57.0 | 6.01e-01 | 90.5% | 93.8% |
| 3955106 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.66 | 47.0 | 4.41e-01 | 74.3% | 78.9% |
D2
medium
residues 108-139
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 72.0 | 5.55e-01 | 90.6% | 61.2% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 68.0 | 5.66e-01 | 90.6% | 73.2% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 71.0 | 5.62e-01 | 93.8% | 66.7% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 66.0 | 5.08e-01 | 90.6% | 58.6% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 63.0 | 3.76e-01 | 96.9% | 27.7% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.69 | 48.0 | 3.23e-01 | 84.4% | 18.3% |
| 1y9bA00 | 1.20.5.780 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin | 0.65 | 47.0 | 3.75e-01 | 90.6% | 38.3% |
| 1iq4A00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.62 | 44.0 | 2.87e-01 | 84.4% | 86.0% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 44.0 | 3.87e-01 | 100.0% | 98.3% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.56 | 39.0 | 3.27e-01 | 75.0% | 37.7% |
| 1f2vA00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.56 | 47.0 | 2.94e-01 | 100.0% | 79.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948900 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.84 | 63.0 | 4.80e-01 | 84.4% | 38.7% |
| 3282979 | 101.1.11.15 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › VapB_antitoxin | 0.80 | 60.0 | 5.27e-01 | 84.4% | 54.0% |
| 5028248 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.76 | 57.0 | 4.98e-01 | 84.4% | 58.0% |
| 5018588 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.74 | 55.0 | 4.50e-01 | 81.2% | 43.3% |
| 4969560 | 101.1.11.38 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF2683 | 0.74 | 54.0 | 4.16e-01 | 81.2% | 34.7% |
| 3480752 | 3406.1.1.0 ↗ | alpha duplicates or obligate multimers › Oligomerisation domain of C4b-binding protein › Oligomerisation domain of C4b-binding protein › Oligomerisation domain of C4b-binding protein | 0.73 | 57.0 | 5.17e-01 | 100.0% | 62.0% |
| 4506364 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.70 | 53.0 | 4.27e-01 | 90.6% | 45.7% |
| 3807164 | 101.1.11.3 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP | 0.68 | 52.0 | 4.51e-01 | 90.6% | 58.2% |
| 4486353 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.57 | 42.0 | 2.58e-01 | 84.4% | 41.4% |
| 3639211 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.55 | 43.0 | 2.70e-01 | 93.8% | 15.8% |