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IMGVR_UViG_2502082094_000002-2502082094-2502095633
Arc-VirIMGVR_UViG_2502082094_000002-2502082094-2502095633
Identity
- Kingdom:
- archaea
Quality
85.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-91
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 53.0 | 5.18e-01 | 86.5% | 75.9% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 49.0 | 5.17e-01 | 81.1% | 100.0% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.65 | 56.0 | 5.26e-01 | 100.0% | 91.4% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 46.0 | 4.87e-01 | 74.3% | 100.0% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 54.0 | 5.17e-01 | 95.9% | 81.4% |
| 3ic8A01 | 3.40.30.110 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.63 | 47.0 | 3.67e-01 | 87.8% | 34.5% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 5.04e-01 | 95.9% | 88.3% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 50.0 | 4.16e-01 | 91.9% | 96.2% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.60 | 48.0 | 4.77e-01 | 89.2% | 89.6% |
| 3fyfA00 | 2.40.128.410 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 50.0 | 4.09e-01 | 100.0% | 91.9% |
| 1wp5A00 | 2.120.10.90 | Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal | 0.59 | 47.0 | 3.08e-01 | 100.0% | 20.2% |
| 2ojhA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 44.0 | 3.03e-01 | 82.4% | 26.0% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 41.0 | 3.46e-01 | 77.0% | 95.5% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 41.0 | 3.43e-01 | 81.1% | 81.6% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 50.0 | 4.07e-01 | 100.0% | 90.2% |
| 5w8mA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.56 | 41.0 | 3.02e-01 | 77.0% | 40.3% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.55 | 37.0 | 2.92e-01 | 70.3% | 36.4% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 41.0 | 3.10e-01 | 81.1% | 49.2% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 46.0 | 3.87e-01 | 93.2% | 89.8% |
| 5yjwA00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.54 | 43.0 | 2.69e-01 | 87.8% | 33.0% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 44.0 | 3.42e-01 | 95.9% | 84.3% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.54 | 38.0 | 3.60e-01 | 75.7% | 100.0% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.53 | 44.0 | 3.95e-01 | 94.6% | 67.0% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 45.0 | 3.17e-01 | 98.6% | 95.7% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.53 | 43.0 | 3.26e-01 | 91.9% | 80.8% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 40.0 | 3.13e-01 | 87.8% | 71.1% |
| 3f4lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 40.0 | 2.91e-01 | 83.8% | 75.8% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 27.0 | 2.75e-01 | 94.6% | 48.0% |
| 2d42A02 | 3.10.450.380 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 4.23e-01 | 83.8% | 98.5% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 45.0 | 4.08e-01 | 95.9% | 96.9% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.94e-01 | 78.4% | 93.5% |
| 1o97C00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 41.0 | 2.93e-01 | 89.2% | 72.1% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 40.0 | 2.86e-01 | 90.5% | 76.6% |
| 2h7fX02 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.51 | 38.0 | 2.73e-01 | 81.1% | 38.6% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.57e-01 | 78.4% | 79.5% |
| 3l50A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 38.0 | 3.21e-01 | 82.4% | 94.9% |
| 3q48A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.75e-01 | 83.8% | 88.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.88 | 68.0 | 7.54e-01 | 87.8% | 100.0% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 57.0 | 5.60e-01 | 90.5% | 80.0% |
| 3989574 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 59.0 | 5.67e-01 | 97.3% | 78.8% |
| 3507639 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.71 | 56.0 | 5.80e-01 | 94.6% | 91.4% |
| 4026408 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.71 | 54.0 | 4.93e-01 | 89.2% | 61.0% |
| 4163661 | 4.1.1.446 ↗ | beta barrels › SH3 › SH3 › SH3 › PF30222 | 0.71 | 57.0 | 5.95e-01 | 90.5% | 97.1% |
| 4377781 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.68 | 55.0 | 5.43e-01 | 90.5% | 91.3% |
| 3480200 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.68 | 47.0 | 4.76e-01 | 73.0% | 100.0% |
| 5031673 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 54.0 | 4.86e-01 | 90.5% | 77.1% |
| 3280641 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.66 | 56.0 | 5.09e-01 | 94.6% | 72.0% |
| 4041376 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 53.0 | 5.18e-01 | 90.5% | 82.5% |
| 3583296 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.66 | 47.0 | 4.87e-01 | 77.0% | 95.7% |
| 4031151 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.66 | 46.0 | 4.63e-01 | 74.3% | 97.3% |
| 3704305 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.66 | 53.0 | 5.49e-01 | 90.5% | 94.3% |
| 3730011 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.65 | 57.0 | 4.69e-01 | 100.0% | 61.4% |
| 3991896 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.65 | 51.0 | 4.75e-01 | 86.5% | 77.9% |
| 4109046 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.65 | 52.0 | 5.04e-01 | 90.5% | 94.1% |
| 197051 | 4.1.1.74 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3247 | 0.65 | 56.0 | 5.26e-01 | 100.0% | 91.4% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 44.0 | 4.92e-01 | 73.0% | 94.5% |
| 3623785 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.65 | 47.0 | 4.72e-01 | 77.0% | 85.3% |
| 157624 | 4.1.1.47 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin6 | 0.65 | 54.0 | 5.17e-01 | 95.9% | 81.4% |
| 157526 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.64 | 47.0 | 5.03e-01 | 78.4% | 100.0% |
| 3787441 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.64 | 47.0 | 4.47e-01 | 78.4% | 70.0% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 45.0 | 4.87e-01 | 74.3% | 96.6% |
| 3926120 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.64 | 50.0 | 4.10e-01 | 90.5% | 44.8% |
| 3197566 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.63 | 51.0 | 4.66e-01 | 90.5% | 91.0% |
| 3210707 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.62 | 45.0 | 4.87e-01 | 77.0% | 100.0% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.62 | 50.0 | 5.16e-01 | 91.9% | 94.2% |
| 3265723 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 31.0 | 3.62e-01 | 75.7% | 68.0% |
| 3786396 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.62 | 52.0 | 4.49e-01 | 100.0% | 66.2% |
| 4071824 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.61 | 51.0 | 5.12e-01 | 98.6% | 92.0% |
| 3969959 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.36e-01 | 82.4% | 84.4% |
| 3631298 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.61 | 48.0 | 4.81e-01 | 86.5% | 88.0% |
| 3721062 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.60 | 50.0 | 4.84e-01 | 93.2% | 90.6% |
| 3325087 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.58 | 41.0 | 2.68e-01 | 75.7% | 35.8% |
| 3972534 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.57 | 48.0 | 3.01e-01 | 91.9% | 33.5% |
| 3520265 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 40.0 | 3.27e-01 | 74.3% | 62.1% |
| 4426276 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 45.0 | 4.67e-01 | 90.5% | 98.6% |
| 4930386 | 11.1.1.1395 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HcyBio | 0.57 | 40.0 | 3.74e-01 | 77.0% | 100.0% |
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 44.0 | 4.55e-01 | 90.5% | 91.4% |
| 1778160 | 109.1.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 | 0.56 | 48.0 | 3.44e-01 | 100.0% | 95.4% |
| 3411042 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.56 | 38.0 | 4.10e-01 | 70.3% | 100.0% |
| 3607454 | 220.1.1.306 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_22 | 0.55 | 42.0 | 3.85e-01 | 82.4% | 89.0% |
| 3692667 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.55 | 44.0 | 2.74e-01 | 86.5% | 16.7% |
| 5018908 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.55 | 45.0 | 3.83e-01 | 95.9% | 91.9% |
| 4032337 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.55 | 44.0 | 3.44e-01 | 89.2% | 70.9% |
| 4598668 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 45.0 | 4.28e-01 | 89.2% | 85.9% |
| 3468988 | 1.1.5.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 | 0.53 | 43.0 | 3.35e-01 | 95.9% | 84.6% |
| 3478975 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.53 | 41.0 | 3.43e-01 | 83.8% | 76.3% |
| 3210421 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.53 | 40.0 | 3.26e-01 | 83.8% | 77.4% |
| 3658750 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.52 | 39.0 | 3.38e-01 | 82.4% | 80.0% |
| 3970925 | 11.1.1.42 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C | 0.52 | 39.0 | 3.71e-01 | 81.1% | 86.7% |
| 4944802 | 2008.1.1.15 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N | 0.51 | 39.0 | 2.75e-01 | 83.8% | 41.5% |
| 3945110 | 11.1.1.42 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C | 0.51 | 37.0 | 3.53e-01 | 78.4% | 84.4% |
| 3480705 | 385.1.1.2 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta | 0.50 | 38.0 | 3.36e-01 | 81.1% | 87.6% |
| 4199672 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.50 | 39.0 | 3.64e-01 | 86.5% | 93.7% |