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IMGVR_UViG_2502082094_000002-2502082094-2502095636
Arc-VirIMGVR_UViG_2502082094_000002-2502082094-2502095636
Identity
- Kingdom:
- archaea
Quality
89.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ut9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 46.0 | 3.95e-01 | 77.0% | 56.1% |
| 3irzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 43.0 | 3.66e-01 | 77.0% | 43.4% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.63 | 44.0 | 4.71e-01 | 73.8% | 94.0% |
| 2druA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 42.0 | 3.56e-01 | 70.5% | 86.4% |
| 4zzfA02 | 2.60.40.4070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 46.0 | 3.97e-01 | 78.7% | 61.5% |
| 2pn5A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.62 | 45.0 | 3.87e-01 | 78.7% | 49.5% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 43.0 | 4.34e-01 | 78.7% | 74.2% |
| 2byvE03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 40.0 | 2.80e-01 | 72.1% | 22.9% |
| 3r4rA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 44.0 | 3.39e-01 | 78.7% | 42.3% |
| 3cu7A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 40.0 | 3.35e-01 | 73.8% | 37.4% |
| 7sqxA02 | 3.30.70.2150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 44.0 | 3.77e-01 | 78.7% | 86.7% |
| 2p9rA00 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.60 | 41.0 | 3.55e-01 | 73.8% | 48.0% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 43.0 | 3.63e-01 | 77.0% | 48.0% |
| 3rbgD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 3.43e-01 | 72.1% | 80.6% |
| 6se8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 3.61e-01 | 80.3% | 56.5% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 40.0 | 4.15e-01 | 73.8% | 89.1% |
| 4r9pA00 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 50.0 | 3.48e-01 | 100.0% | 85.2% |
| 4rdbA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.07e-01 | 78.7% | 38.9% |
| 6genR01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.55 | 43.0 | 3.81e-01 | 100.0% | 58.5% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.35e-01 | 80.3% | 54.1% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 38.0 | 2.99e-01 | 86.9% | 34.3% |
| 2evrA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.54 | 45.0 | 3.45e-01 | 96.7% | 91.2% |
| 1xr0B01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 36.0 | 3.24e-01 | 72.1% | 80.2% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.53 | 43.0 | 3.46e-01 | 98.4% | 64.3% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 42.0 | 3.36e-01 | 100.0% | 41.3% |
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 41.0 | 3.32e-01 | 96.7% | 44.2% |
| 3hqiA01 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.51 | 41.0 | 3.27e-01 | 95.1% | 92.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994977 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.73 | 53.0 | 4.09e-01 | 90.2% | 35.1% |
| 3405488 | 2002.1.1.42 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N | 0.68 | 44.0 | 2.60e-01 | 100.0% | 8.4% |
| 5026070 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.66 | 42.0 | 3.67e-01 | 77.0% | 43.3% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 42.0 | 4.62e-01 | 72.1% | 93.3% |
| 5051445 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.63 | 36.0 | 2.80e-01 | 73.8% | 25.4% |
| 4964967 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.63 | 38.0 | 2.93e-01 | 72.1% | 26.4% |
| 4956457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 43.0 | 4.61e-01 | 73.8% | 90.0% |
| 5016177 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 43.0 | 4.62e-01 | 77.0% | 90.0% |
| 4241460 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 43.0 | 3.37e-01 | 83.6% | 32.6% |
| 4946681 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.62 | 54.0 | 3.34e-01 | 100.0% | 22.4% |
| 3524341 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 42.0 | 3.63e-01 | 78.7% | 44.0% |
| 4976096 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.61 | 52.0 | 3.26e-01 | 100.0% | 22.6% |
| 3940822 | 221.1.1.36 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N | 0.60 | 40.0 | 3.51e-01 | 70.5% | 89.5% |
| 3247905 | 12.3.1.46 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD | 0.59 | 44.0 | 3.02e-01 | 82.0% | 51.6% |
| 3900729 | 221.1.1.176 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 | 0.58 | 36.0 | 3.32e-01 | 78.7% | 46.3% |
| 1281652 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 40.0 | 4.15e-01 | 73.8% | 89.1% |
| 5012898 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 43.0 | 4.33e-01 | 88.5% | 88.3% |
| 3442191 | 10.35.1.1 ↗ | beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N | 0.56 | 39.0 | 2.84e-01 | 77.0% | 72.2% |
| 3250018 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 43.0 | 3.16e-01 | 88.5% | 77.2% |
| 3602943 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 39.0 | 4.09e-01 | 77.0% | 94.0% |
| 1447948 | 11.1.4.13 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › P_gingi_FimA | 0.54 | 39.0 | 3.05e-01 | 80.3% | 39.2% |
| 4011128 | 221.1.1.51 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 | 0.53 | 37.0 | 3.33e-01 | 75.4% | 91.1% |
| 4105434 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.51 | 42.0 | 3.24e-01 | 100.0% | 39.0% |
| 4941274 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.51 | 35.0 | 2.81e-01 | 73.8% | 40.0% |
| 4172488 | 2492.1.1.47 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › YwqJ-deaminase | 0.51 | 42.0 | 3.33e-01 | 100.0% | 69.0% |