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IMGVR_UViG_2505313008_000001-2505313008-2505365772

Arc-Vir

IMGVR_UViG_2505313008_000001-2505313008-2505365772

Identity

Kingdom:
archaea

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-141
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.74 21.0 2.75e-01 77.0% 42.2%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.71 41.0 4.40e-01 71.1% 65.3%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 49.0 4.54e-01 77.0% 70.2%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.64 44.0 4.04e-01 70.4% 96.6%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.64 32.0 3.58e-01 72.6% 59.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.63 33.0 4.28e-01 72.6% 87.5%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 43.0 3.30e-01 71.1% 82.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 38.0 3.74e-01 73.3% 56.8%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 43.0 3.96e-01 71.9% 76.7%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.59 46.0 3.46e-01 83.0% 91.9%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 3.48e-01 77.8% 92.7%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 39.0 4.36e-01 74.8% 88.8%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 40.0 4.50e-01 84.4% 92.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 39.0 4.28e-01 83.7% 86.2%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 40.0 4.20e-01 72.6% 84.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.95e-01 74.1% 79.3%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 37.0 4.12e-01 80.0% 88.7%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 44.0 4.24e-01 84.4% 78.5%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 44.0 4.28e-01 90.4% 90.8%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.52 45.0 4.21e-01 91.1% 79.6%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.41e-01 74.1% 57.4%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 36.0 3.74e-01 83.0% 75.2%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.52 44.0 4.22e-01 91.1% 80.3%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 39.0 4.12e-01 77.8% 93.3%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 45.0 3.57e-01 94.8% 74.1%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.28e-01 81.5% 90.2%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 4.08e-01 81.5% 93.1%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.33e-01 81.5% 95.7%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.32e-01 81.5% 87.1%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 3.14e-01 88.1% 98.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 38.0 4.04e-01 78.5% 95.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.30e-01 81.5% 94.8%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.50 41.0 3.09e-01 88.1% 97.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578232 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.67 52.0 4.37e-01 80.7% 64.9%
3874376 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.66 50.0 4.29e-01 79.3% 76.0%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 38.0 4.51e-01 73.3% 83.2%
3596915 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 46.0 2.99e-01 73.3% 35.4%
119302 3146.1.1.0 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain 0.64 44.0 3.33e-01 71.1% 56.0%
4978331 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.62 32.0 4.35e-01 74.1% 95.7%
4408461 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.61 43.0 3.91e-01 72.6% 74.9%
4404709 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.61 43.0 3.97e-01 72.6% 72.6%
5012271 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.60 43.0 3.30e-01 73.3% 83.8%
5013018 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 46.0 4.72e-01 80.0% 93.8%
3953302 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.60 34.0 3.85e-01 77.0% 73.1%
3999169 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 42.0 3.22e-01 74.1% 84.8%
3925444 5087.3.1.0 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.59 45.0 3.84e-01 79.3% 90.0%
4390515 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.58 40.0 3.84e-01 71.1% 83.1%
3962450 9.27.1.0 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.56 41.0 4.62e-01 86.7% 98.1%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 32.0 3.94e-01 83.0% 88.2%
3230371 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.56 41.0 4.54e-01 85.9% 92.7%
3953943 9.27.1.1 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.56 42.0 4.58e-01 86.7% 94.5%
4256135 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.56 46.0 4.07e-01 85.9% 85.8%
4078385 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.55 44.0 3.25e-01 87.4% 97.9%
3478270 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 43.0 2.93e-01 83.7% 95.9%
4945114 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.54 47.0 4.10e-01 91.9% 78.0%
4138079 210.1.2.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 0.54 46.0 3.17e-01 92.6% 96.0%
4989818 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 41.0 3.45e-01 78.5% 69.5%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 30.0 3.30e-01 85.9% 67.8%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.52 39.0 4.11e-01 77.8% 92.6%
4018312 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 42.0 3.71e-01 88.9% 100.0%
1554358 3146.1.1.1 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.51 47.0 3.06e-01 100.0% 47.0%
5014009 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 37.0 3.50e-01 73.3% 70.6%
4964966 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.50 35.0 3.41e-01 72.6% 71.6%
2095476 3146.1.1.1 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.50 46.0 3.02e-01 100.0% 48.8%
3223040 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.50 38.0 3.06e-01 78.5% 74.1%