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IMGVR_UViG_2507262000_000001-2507262000-2507265752

Arc-Vir

IMGVR_UViG_2507262000_000001-2507262000-2507265752

Identity

Kingdom:
archaea

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-82
PDB
D2 medium residues 83-139_339-350
PDB
D3 medium residues 140-197_308-338
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.85 59.0 6.20e-01 70.8% 93.8%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.82 61.0 5.42e-01 78.7% 57.6%
4yjwA00 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.72 62.0 5.09e-01 92.1% 63.4%
1fouA01 1.10.246.30 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 53.0 5.81e-01 83.1% 93.2%
3rguB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.72 56.0 5.73e-01 88.8% 86.2%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 58.0 4.87e-01 87.6% 69.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 49.0 5.16e-01 71.9% 92.2%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.70 48.0 4.35e-01 70.8% 62.2%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.70 61.0 4.43e-01 97.8% 51.2%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 57.0 5.25e-01 85.4% 80.0%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 57.0 4.78e-01 87.6% 55.9%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.69 57.0 4.39e-01 87.6% 80.3%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 55.0 5.03e-01 86.5% 75.4%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 46.0 4.28e-01 70.8% 79.8%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.66 49.0 5.12e-01 84.3% 86.6%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 50.0 4.90e-01 83.1% 80.0%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 42.0 4.48e-01 70.8% 83.8%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.59 50.0 4.46e-01 91.0% 65.9%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.59 39.0 3.90e-01 75.3% 65.2%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 50.0 4.10e-01 96.6% 81.5%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.56 47.0 3.89e-01 87.6% 56.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.56 34.0 3.59e-01 91.0% 67.9%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.56 40.0 4.52e-01 75.3% 100.0%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 44.0 4.64e-01 91.0% 97.4%
4ys0A02 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.55 46.0 3.71e-01 91.0% 97.6%
6lumG01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.51 40.0 3.74e-01 83.1% 89.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4463205 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.80 56.0 3.40e-01 71.9% 15.0%
4095641 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.79 61.0 6.00e-01 80.9% 100.0%
4595635 148.1.3.26 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.76 57.0 4.54e-01 77.5% 45.0%
4507542 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.76 62.0 6.21e-01 85.4% 95.6%
3626229 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.74 61.0 6.31e-01 91.0% 91.8%
4942859 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.74 63.0 6.34e-01 93.3% 97.8%
3411668 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.74 42.0 4.59e-01 86.5% 68.0%
3701245 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.74 50.0 4.71e-01 70.8% 75.5%
3423588 611.7.1.15 alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Rx_N 0.73 61.0 5.57e-01 88.8% 94.8%
3414738 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.73 56.0 5.15e-01 82.0% 74.8%
4214525 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.72 60.0 5.76e-01 88.8% 91.0%
5045176 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.70 60.0 5.70e-01 92.1% 81.6%
3799233 633.6.1.6 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACAD9-ACADV_C 0.70 60.0 5.13e-01 95.5% 75.9%
3705837 192.12.1.5 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › Cmc1 0.67 41.0 4.27e-01 86.5% 64.7%
3772121 632.7.1.19 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › MYO6_lever 0.67 56.0 5.64e-01 91.0% 88.9%
3551747 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.66 47.0 4.08e-01 73.0% 49.6%
4982959 3922.1.1.357 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.64 47.0 4.56e-01 77.5% 72.0%
4997717 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.63 54.0 3.75e-01 97.8% 39.0%
3655782 101.1.2.598 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.62 49.0 3.35e-01 84.3% 98.4%
3796999 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.60 47.0 4.60e-01 91.0% 75.0%
5000824 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.59 48.0 4.07e-01 87.6% 90.3%
3468223 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.58 45.0 3.03e-01 84.3% 95.7%
3508301 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.57 49.0 3.99e-01 97.8% 80.0%
D4 medium residues 201-300
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.62 29.0 3.36e-01 92.0% 60.0%
2kwpA00 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.62 34.0 3.09e-01 96.0% 41.1%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.58 51.0 4.90e-01 100.0% 91.5%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 47.0 4.28e-01 99.0% 97.1%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 28.0 3.41e-01 75.0% 79.7%
2wuqB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 47.0 3.44e-01 100.0% 98.6%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 47.0 3.51e-01 100.0% 96.9%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 46.0 4.40e-01 98.0% 99.2%
1mwsA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 3.20e-01 99.0% 99.1%
2ex2A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 46.0 3.49e-01 100.0% 100.0%
4r70B03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 46.0 4.06e-01 100.0% 81.9%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.51 24.0 3.05e-01 78.0% 73.3%
1ghpA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 45.0 3.37e-01 99.0% 100.0%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 46.0 3.99e-01 100.0% 95.4%
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 45.0 3.21e-01 100.0% 97.2%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 45.0 3.86e-01 100.0% 89.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.50 39.0 3.53e-01 83.0% 79.0%
1bdgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 37.0 3.17e-01 90.0% 47.0%
6pl6B01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 43.0 2.97e-01 95.0% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938121 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.68 33.0 3.58e-01 92.0% 52.9%
4986253 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.63 33.0 3.25e-01 93.0% 44.5%
5033617 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 49.0 4.57e-01 100.0% 97.6%
4463774 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.53 47.0 3.94e-01 99.0% 97.7%
4453642 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 3.60e-01 89.0% 93.1%
5072002 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 48.0 4.32e-01 100.0% 99.3%
5050074 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 47.0 4.28e-01 100.0% 89.6%
5051305 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 4.23e-01 94.0% 88.0%
3606302 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 46.0 3.74e-01 100.0% 82.1%
5048375 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 46.0 4.30e-01 99.0% 95.2%
4979132 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 46.0 4.24e-01 99.0% 95.3%
3547256 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.51 35.0 3.33e-01 87.0% 58.3%
5073525 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 44.0 4.13e-01 95.0% 94.4%
4966003 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.51 34.0 3.38e-01 100.0% 63.8%
5008037 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 46.0 4.26e-01 99.0% 88.8%
4943309 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 4.32e-01 98.0% 100.0%
3283270 881.1.1.15 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.51 45.0 4.06e-01 99.0% 94.3%
5040627 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 46.0 4.19e-01 99.0% 91.5%
4999612 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 4.19e-01 100.0% 97.7%
4999967 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 46.0 4.20e-01 99.0% 96.9%
5053654 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 4.11e-01 94.0% 88.3%
3287478 223.1.1.26 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.50 45.0 3.76e-01 100.0% 77.7%
3285474 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.50 43.0 3.35e-01 98.0% 97.5%
4964986 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.50 33.0 3.37e-01 100.0% 67.0%
4931048 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.50 32.0 3.25e-01 99.0% 64.0%
3471405 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.50 45.0 4.14e-01 100.0% 94.6%