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IMGVR_UViG_2510065051_000001-2510065051-2510274510
Arc-VirIMGVR_UViG_2510065051_000001-2510065051-2510274510
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 112-199
Domain cluster:
rep: IMGVR_UViG_2554235495_000003-2554235495-2556165320__D234-316
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03551.21 best | PadR | 38.5 | 1.30e-09 | 77.3% | 89.3% |
D2
medium
residues 27-93
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 37.0 | 2.95e-01 | 71.6% | 29.4% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.56 | 45.0 | 3.05e-01 | 98.5% | 56.4% |
| 1yhpA02 | 2.60.40.1720 | Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 | 0.53 | 38.0 | 3.23e-01 | 77.6% | 55.8% |
| 1h54A03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.53 | 32.0 | 3.17e-01 | 70.1% | 55.4% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.53 | 29.0 | 3.00e-01 | 71.6% | 54.8% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.53 | 36.0 | 3.91e-01 | 86.6% | 86.0% |
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 33.0 | 3.57e-01 | 83.6% | 75.9% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 43.0 | 2.86e-01 | 98.5% | 42.2% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 30.0 | 2.62e-01 | 82.1% | 31.8% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.50 | 31.0 | 3.15e-01 | 70.1% | 60.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030311 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 42.0 | 4.56e-01 | 95.5% | 78.2% |
| 4172303 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.64 | 34.0 | 2.79e-01 | 80.6% | 27.2% |
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.62 | 42.0 | 4.58e-01 | 70.1% | 96.4% |
| 3483861 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.56 | 36.0 | 3.46e-01 | 70.1% | 55.0% |
| 3882464 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 31.0 | 3.05e-01 | 80.6% | 50.7% |
| 3200380 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.52 | 35.0 | 3.40e-01 | 71.6% | 67.5% |
| 3464402 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 28.0 | 2.85e-01 | 74.6% | 50.8% |
| 3550232 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.52 | 33.0 | 3.14e-01 | 79.1% | 50.6% |
| 5022933 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.51 | 34.0 | 3.67e-01 | 70.1% | 85.5% |
| 4408393 | 2003.1.5.174 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 | 0.51 | 34.0 | 2.18e-01 | 70.1% | 27.3% |
| 3283684 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.50 | 32.0 | 2.55e-01 | 73.1% | 27.5% |
| 3235272 | 5.1.3.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF | 0.50 | 41.0 | 2.79e-01 | 95.5% | 49.3% |