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IMGVR_UViG_2510461022_000001-2510461022-2510572178
Arc-VirIMGVR_UViG_2510461022_000001-2510461022-2510572178
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-141
Domain cluster:
rep: MT764210__UXF49854.1__7841G1D8-26__00026__D257-398
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.82 | 73.0 | 7.52e-01 | 98.5% | 99.2% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.78 | 52.0 | 6.02e-01 | 99.3% | 92.9% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.76 | 68.0 | 6.85e-01 | 99.3% | 96.3% |
| 3fz2A00 | 3.30.70.1700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U | 0.75 | 65.0 | 6.77e-01 | 97.8% | 100.0% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.72 | 67.0 | 5.76e-01 | 100.0% | 80.5% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.69 | 63.0 | 6.32e-01 | 100.0% | 96.5% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 44.0 | 4.74e-01 | 85.4% | 77.2% |
| 2ca9A02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.68 | 36.0 | 4.38e-01 | 85.4% | 78.7% |
| 3gb0A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 43.0 | 4.68e-01 | 90.5% | 76.8% |
| 2xzmE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 33.0 | 3.61e-01 | 89.1% | 55.2% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.67 | 47.0 | 5.14e-01 | 99.3% | 88.5% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 43.0 | 4.65e-01 | 90.5% | 77.2% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.67 | 40.0 | 4.66e-01 | 82.5% | 85.1% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 38.0 | 4.30e-01 | 72.3% | 75.0% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 36.0 | 4.32e-01 | 92.0% | 83.0% |
| 5uejA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 39.0 | 4.25e-01 | 89.1% | 77.2% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.60 | 31.0 | 3.78e-01 | 84.7% | 79.3% |
| 1ivzA00 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.60 | 43.0 | 4.42e-01 | 88.3% | 78.0% |
| 3nrfA00 | 2.60.40.4110 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 | 0.59 | 37.0 | 4.23e-01 | 85.4% | 85.3% |
| 5i97C00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.57 | 42.0 | 4.21e-01 | 100.0% | 75.2% |
| 3eniC00 | 2.50.10.10 | Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A | 0.57 | 49.0 | 3.63e-01 | 93.4% | 44.7% |
| 3pg1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 36.0 | 3.73e-01 | 77.4% | 66.7% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.56 | 44.0 | 3.91e-01 | 81.8% | 87.4% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 4.30e-01 | 90.5% | 88.8% |
| 4azsA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 33.0 | 4.09e-01 | 97.8% | 100.0% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.89e-01 | 83.9% | 79.5% |
| 3bghB01 | 3.30.160.180 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain | 0.54 | 42.0 | 3.93e-01 | 100.0% | 65.5% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.54 | 36.0 | 4.23e-01 | 92.7% | 98.9% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 4.07e-01 | 100.0% | 80.2% |
| 3bb9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 4.08e-01 | 100.0% | 82.4% |
| 3w3sA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 48.0 | 3.58e-01 | 100.0% | 84.9% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.85e-01 | 100.0% | 81.2% |
| 4n4rB00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 34.0 | 3.36e-01 | 96.4% | 62.9% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 36.0 | 3.74e-01 | 100.0% | 77.4% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 45.0 | 3.52e-01 | 97.8% | 90.7% |
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.50 | 36.0 | 3.55e-01 | 74.5% | 88.6% |
| 2gxfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.82e-01 | 100.0% | 83.9% |
| 7vu0A01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.50 | 37.0 | 2.69e-01 | 78.1% | 47.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004177 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.85 | 74.0 | 7.77e-01 | 97.8% | 99.2% |
| 4883824 | 304.124.1.6 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF5072 | 0.83 | 69.0 | 7.19e-01 | 100.0% | 92.2% |
| 2642577 | 304.124.1.3 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 | 0.81 | 73.0 | 7.43e-01 | 99.3% | 97.0% |
| 3966645 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.81 | 69.0 | 7.20e-01 | 97.1% | 98.4% |
| 4928893 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.81 | 75.0 | 7.41e-01 | 99.3% | 97.2% |
| 3973260 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.79 | 48.0 | 5.07e-01 | 99.3% | 66.4% |
| 5023738 | 11.1.1.1443 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 | 0.78 | 40.0 | 4.46e-01 | 100.0% | 61.8% |
| 4954550 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.76 | 58.0 | 6.29e-01 | 99.3% | 93.9% |
| 5454 | 304.124.1.2 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 | 0.76 | 68.0 | 6.89e-01 | 100.0% | 97.8% |
| 5083880 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.75 | 69.0 | 6.83e-01 | 100.0% | 100.0% |
| 364035 | 304.124.1.1 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U | 0.73 | 65.0 | 6.67e-01 | 98.5% | 99.2% |
| 4291659 | 304.124.1.8 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 | 0.72 | 66.0 | 6.63e-01 | 98.5% | 98.6% |
| 4261744 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.72 | 62.0 | 6.43e-01 | 98.5% | 100.0% |
| 3544378 | 11.1.1.414 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 | 0.71 | 44.0 | 4.24e-01 | 83.9% | 54.8% |
| 3970985 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.71 | 66.0 | 6.55e-01 | 99.3% | 99.3% |
| 5052852 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.67 | 55.0 | 5.01e-01 | 98.5% | 65.2% |
| 3934937 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.64 | 48.0 | 4.31e-01 | 100.0% | 55.8% |
| 4941514 | 11.1.5.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 | 0.64 | 44.0 | 5.15e-01 | 83.2% | 100.0% |
| 4395470 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.63 | 36.0 | 4.11e-01 | 92.7% | 74.0% |
| 3289660 | 305.1.1.3 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › DUF3000 | 0.61 | 44.0 | 4.67e-01 | 74.5% | 84.2% |
| 3959045 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.61 | 44.0 | 4.65e-01 | 74.5% | 84.2% |
| 3929879 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.60 | 44.0 | 4.16e-01 | 86.1% | 62.8% |
| 3786987 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.60 | 55.0 | 3.95e-01 | 100.0% | 89.3% |
| 3970688 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 37.0 | 4.24e-01 | 84.7% | 86.0% |
| 3495018 | 11.12.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like | 0.58 | 45.0 | 3.88e-01 | 88.3% | 50.9% |
| 5020942 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.58 | 45.0 | 4.23e-01 | 100.0% | 65.9% |
| 3857701 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 52.0 | 4.00e-01 | 100.0% | 88.4% |
| 396590 | 11.1.1.181 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4354 | 0.58 | 37.0 | 4.21e-01 | 86.1% | 85.4% |
| 3811744 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.57 | 42.0 | 4.17e-01 | 100.0% | 73.6% |
| 3642155 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.57 | 38.0 | 3.62e-01 | 86.1% | 55.3% |
| 3510509 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.57 | 41.0 | 4.01e-01 | 83.9% | 66.5% |
| 3232202 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 40.0 | 3.97e-01 | 83.9% | 69.3% |
| 4997220 | 304.102.1.2 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruD | 0.55 | 47.0 | 4.01e-01 | 92.7% | 90.7% |
| 4984209 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 37.0 | 3.96e-01 | 92.7% | 79.2% |
| 1407174 | 4142.1.1.2 ↗ | a+b two layers › YehR-like › YehR-like › YehR-like › SP_0191-like | 0.54 | 36.0 | 3.62e-01 | 78.1% | 64.3% |
| 3615602 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 44.0 | 4.10e-01 | 100.0% | 70.9% |
| 3598427 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 41.0 | 4.09e-01 | 100.0% | 77.1% |
| 4002235 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 37.0 | 3.92e-01 | 99.3% | 81.7% |
| 5025924 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 42.0 | 4.46e-01 | 83.9% | 99.2% |
| 4124402 | 7503.1.1.17 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF26521 | 0.53 | 40.0 | 4.01e-01 | 81.0% | 98.6% |
| 3806477 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.52 | 46.0 | 4.31e-01 | 97.1% | 89.4% |
| 3278413 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.51 | 43.0 | 4.28e-01 | 89.1% | 94.3% |
| 3963916 | 7503.1.1.6 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › GNA1162-like | 0.51 | 44.0 | 3.97e-01 | 100.0% | 68.6% |
| 4950139 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.51 | 37.0 | 3.88e-01 | 100.0% | 83.2% |
| 3699878 | 12.1.1.94 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 | 0.50 | 40.0 | 4.17e-01 | 83.9% | 96.0% |
| 3283278 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.50 | 40.0 | 4.08e-01 | 84.7% | 94.1% |