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IMGVR_UViG_2513237066_000001-2513237066-2513474448
Arc-VirIMGVR_UViG_2513237066_000001-2513237066-2513474448
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-119
Domain cluster:
rep: MT006234.1__QIG78055.1__BRUR0010001c01_00024__00024__D3-152
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.81 | 45.0 | 5.63e-01 | 71.1% | 88.7% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.68 | 42.0 | 3.25e-01 | 100.0% | 28.5% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.62 | 44.0 | 4.06e-01 | 73.7% | 77.6% |
| 4jf8A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.61 | 44.0 | 4.10e-01 | 75.4% | 66.0% |
| 3gocA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.60 | 47.0 | 3.66e-01 | 80.7% | 43.9% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.60 | 43.0 | 3.96e-01 | 73.7% | 77.2% |
| 3cu3A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 46.0 | 4.10e-01 | 81.6% | 58.6% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 44.0 | 4.10e-01 | 78.1% | 68.1% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 44.0 | 4.19e-01 | 78.9% | 68.8% |
| 4kz1A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.59 | 44.0 | 4.15e-01 | 78.1% | 71.1% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.58 | 42.0 | 3.81e-01 | 74.6% | 78.1% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.58 | 49.0 | 3.85e-01 | 90.4% | 44.9% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 45.0 | 4.00e-01 | 83.3% | 95.2% |
| 1w7cA03 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 4.10e-01 | 74.6% | 84.3% |
| 3a76A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 43.0 | 4.04e-01 | 82.5% | 69.1% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 43.0 | 3.94e-01 | 86.8% | 61.0% |
| 3gzrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 42.0 | 3.96e-01 | 81.6% | 68.8% |
| 3soyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 42.0 | 3.95e-01 | 81.6% | 69.0% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.54 | 36.0 | 4.13e-01 | 88.6% | 92.9% |
| 3fgyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.82e-01 | 93.0% | 65.9% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.53 | 42.0 | 3.27e-01 | 85.1% | 100.0% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 41.0 | 3.91e-01 | 82.5% | 70.9% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.73e-01 | 82.5% | 73.9% |
| 2f86B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.85e-01 | 79.8% | 72.9% |
| 1s5aB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.79e-01 | 82.5% | 74.1% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.52e-01 | 82.5% | 75.7% |
| 3f7xA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.86e-01 | 82.5% | 75.2% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.52 | 37.0 | 3.30e-01 | 74.6% | 80.5% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.78e-01 | 83.3% | 74.5% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 43.0 | 3.26e-01 | 93.9% | 71.9% |
| 1t5rB00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 43.0 | 3.30e-01 | 93.9% | 72.7% |
| 2wiqA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 37.0 | 2.95e-01 | 75.4% | 73.8% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039841 | 330.1.1.36 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF | 0.90 | 80.0 | 8.16e-01 | 100.0% | 95.5% |
| 3499841 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.87 | 52.0 | 5.89e-01 | 87.7% | 76.7% |
| 4330018 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.87 | 52.0 | 6.31e-01 | 87.7% | 90.7% |
| 3216163 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.81 | 53.0 | 5.85e-01 | 86.8% | 80.0% |
| 3481564 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.81 | 52.0 | 6.16e-01 | 72.8% | 92.5% |
| 3262206 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.77 | 72.0 | 6.33e-01 | 100.0% | 76.2% |
| 3786132 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.74 | 69.0 | 6.29e-01 | 100.0% | 91.0% |
| 5060223 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.69 | 49.0 | 3.94e-01 | 72.8% | 39.3% |
| 3269706 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 39.0 | 4.53e-01 | 94.7% | 83.7% |
| 3481504 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.66 | 47.0 | 4.62e-01 | 73.7% | 84.2% |
| 3594550 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 44.0 | 3.92e-01 | 70.2% | 91.5% |
| 3566775 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.64 | 42.0 | 2.80e-01 | 100.0% | 17.2% |
| 3360262 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.63 | 45.0 | 3.82e-01 | 73.7% | 63.2% |
| 3780194 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 48.0 | 3.65e-01 | 80.7% | 36.3% |
| 4136159 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.63 | 58.0 | 4.99e-01 | 100.0% | 95.4% |
| 3271615 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 39.0 | 2.60e-01 | 72.8% | 15.9% |
| 1146680 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.62 | 45.0 | 4.16e-01 | 75.4% | 67.4% |
| 4940463 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.62 | 43.0 | 4.13e-01 | 72.8% | 74.8% |
| 5042338 | 7504.1.1.2 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T | 0.61 | 43.0 | 3.92e-01 | 73.7% | 90.3% |
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.61 | 48.0 | 4.45e-01 | 100.0% | 67.1% |
| 3706217 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 41.0 | 3.55e-01 | 70.2% | 88.3% |
| 4892175 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.60 | 46.0 | 4.41e-01 | 82.5% | 71.1% |
| 6409 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.60 | 46.0 | 4.10e-01 | 81.6% | 58.6% |
| 6403 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.59 | 44.0 | 4.14e-01 | 78.1% | 70.0% |
| 5079533 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 43.0 | 3.46e-01 | 75.4% | 84.2% |
| 4466411 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.59 | 42.0 | 3.64e-01 | 73.7% | 61.1% |
| 4886881 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 45.0 | 4.27e-01 | 82.5% | 69.6% |
| 5046132 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.58 | 43.0 | 3.32e-01 | 78.1% | 91.4% |
| 4460572 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.58 | 41.0 | 3.94e-01 | 80.7% | 63.8% |
| 3189243 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.57 | 41.0 | 3.87e-01 | 73.7% | 100.0% |
| 5038095 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.56 | 45.0 | 4.40e-01 | 100.0% | 77.6% |
| 5069076 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.56 | 44.0 | 4.33e-01 | 100.0% | 78.3% |
| 5083094 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.56 | 46.0 | 3.58e-01 | 88.6% | 96.8% |
| 2632036 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.56 | 43.0 | 4.05e-01 | 81.6% | 71.0% |
| 4941606 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.56 | 42.0 | 3.94e-01 | 78.9% | 93.6% |
| 169840 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 40.0 | 3.88e-01 | 93.0% | 67.2% |
| 3938778 | 11.1.1.673 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N | 0.55 | 40.0 | 4.06e-01 | 76.3% | 93.0% |
| 4932446 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.55 | 43.0 | 4.31e-01 | 100.0% | 80.8% |
| 3396540 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.55 | 40.0 | 3.22e-01 | 76.3% | 77.8% |
| 3725346 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.54 | 41.0 | 4.01e-01 | 84.2% | 71.5% |
| 5037445 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 43.0 | 3.34e-01 | 86.0% | 95.4% |
| 4403206 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.54 | 38.0 | 3.46e-01 | 72.8% | 65.8% |
| 3611338 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 3.73e-01 | 72.8% | 76.8% |
| 4974362 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 43.0 | 3.36e-01 | 86.8% | 96.8% |
| 3606640 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 43.0 | 4.45e-01 | 90.4% | 96.4% |
| 3225351 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 44.0 | 3.21e-01 | 91.2% | 52.6% |
| 5013876 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 42.0 | 3.28e-01 | 85.1% | 94.8% |
| 4978995 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 42.0 | 3.27e-01 | 84.2% | 97.1% |
| 9395 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.53 | 42.0 | 3.31e-01 | 85.1% | 93.9% |
| 3186839 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 43.0 | 3.05e-01 | 90.4% | 97.0% |
| 1502527 | 5089.1.1.4 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › MACPF_1 | 0.51 | 37.0 | 2.79e-01 | 73.7% | 86.9% |
| 4955361 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 41.0 | 3.19e-01 | 86.8% | 93.7% |
| 3286883 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.51 | 42.0 | 3.29e-01 | 89.5% | 92.7% |
| 3349352 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.50 | 45.0 | 3.84e-01 | 100.0% | 62.6% |
| 3511117 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.50 | 37.0 | 3.25e-01 | 76.3% | 83.6% |
D2
high
residues 157-212
Domain cluster:
rep: OP131296.1__UWJ03902.1__Skadi8_36__00035__D157-211