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IMGVR_UViG_2516653072_000001-2516653072-2517012020
Arc-VirIMGVR_UViG_2516653072_000001-2516653072-2517012020
Identity
- Kingdom:
- archaea
Quality
86.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-72
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.64 | 47.0 | 4.32e-01 | 100.0% | 58.9% |
| 1vk3A04 | 3.30.70.1670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formylglycinamide ribonucleotide amidotransferase, C-terminal domain | 0.63 | 52.0 | 4.76e-01 | 93.0% | 75.0% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 49.0 | 4.67e-01 | 100.0% | 72.1% |
| 5c4iE01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.62 | 46.0 | 3.31e-01 | 93.0% | 27.1% |
| 5dlyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 52.0 | 3.54e-01 | 100.0% | 82.3% |
| 1ucnA00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.57 | 46.0 | 3.69e-01 | 93.0% | 48.3% |
| 3cvoA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 41.0 | 3.12e-01 | 80.3% | 91.2% |
| 4krgA02 | 3.40.50.12180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 40.0 | 2.95e-01 | 77.5% | 51.2% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 48.0 | 4.07e-01 | 100.0% | 66.9% |
| 4ewtA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.56e-01 | 81.7% | 52.2% |
| 2fiuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.55e-01 | 93.0% | 56.8% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.51e-01 | 100.0% | 48.1% |
| 4jg3A00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.53 | 45.0 | 3.14e-01 | 100.0% | 72.5% |
| 1av5A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.53 | 46.0 | 3.98e-01 | 100.0% | 86.7% |
| 4dkjA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 3.03e-01 | 100.0% | 74.0% |
| 3k59A07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.51 | 38.0 | 3.17e-01 | 83.1% | 97.2% |
| 2hekA02 | 3.30.70.1370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › HD domain like | 0.51 | 43.0 | 4.00e-01 | 93.0% | 85.2% |
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.63e-01 | 93.0% | 62.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3745560 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.74 | 54.0 | 4.14e-01 | 88.7% | 34.4% |
| 5041214 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.73 | 55.0 | 4.34e-01 | 94.4% | 38.7% |
| 4954970 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.70 | 52.0 | 4.14e-01 | 93.0% | 38.7% |
| 4438268 | 2003.1.2.55 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Mqo | 0.67 | 58.0 | 3.54e-01 | 98.6% | 24.1% |
| 3961918 | 2003.1.3.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo | 0.67 | 58.0 | 3.83e-01 | 97.2% | 41.2% |
| 4000752 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.66 | 59.0 | 3.97e-01 | 98.6% | 36.5% |
| None | — | 0.66 | 59.0 | 3.61e-01 | 98.6% | 25.2% | |
| 3978570 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.65 | 59.0 | 3.59e-01 | 98.6% | 24.9% |
| 3601392 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.65 | 59.0 | 4.40e-01 | 100.0% | 44.7% |
| None | — | 0.65 | 58.0 | 3.64e-01 | 98.6% | 28.6% | |
| 3285209 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.63 | 49.0 | 4.91e-01 | 100.0% | 83.6% |
| 4084908 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 46.0 | 4.32e-01 | 93.0% | 65.6% |
| 3690159 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.61 | 53.0 | 3.72e-01 | 100.0% | 47.0% |
| 3271101 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.60 | 40.0 | 3.89e-01 | 94.4% | 61.3% |
| 3839279 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.60 | 52.0 | 4.52e-01 | 94.4% | 67.6% |
| 4940284 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.59 | 38.0 | 3.83e-01 | 94.4% | 62.7% |
| 4020396 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.59 | 42.0 | 3.94e-01 | 94.4% | 60.0% |
| 4928076 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.57 | 48.0 | 4.60e-01 | 100.0% | 80.7% |
| 4945381 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 40.0 | 3.86e-01 | 93.0% | 63.5% |
| 4994969 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.57 | 50.0 | 4.34e-01 | 100.0% | 68.2% |
| 3188848 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.56 | 48.0 | 3.24e-01 | 100.0% | 73.2% |
| 3368327 | 304.34.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases › NDK | 0.55 | 44.0 | 3.39e-01 | 93.0% | 39.5% |
| 4559672 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.55 | 46.0 | 3.05e-01 | 94.4% | 30.7% |
| 3346945 | 4955.1.1.1 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_7 | 0.55 | 48.0 | 4.01e-01 | 100.0% | 72.3% |
| 3690410 | 304.61.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem | 0.55 | 48.0 | 3.35e-01 | 100.0% | 67.6% |
| 3631449 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.54 | 47.0 | 2.98e-01 | 100.0% | 25.8% |
| 3285458 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.54 | 44.0 | 3.69e-01 | 93.0% | 60.0% |
| 3693358 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.54 | 44.0 | 3.93e-01 | 94.4% | 63.8% |
| 5025539 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.53 | 47.0 | 3.42e-01 | 100.0% | 82.0% |
| 2596972 | 304.4.1.13 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › SOR | 0.53 | 42.0 | 3.46e-01 | 93.0% | 48.6% |
| 3320299 | 304.28.1.16 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA | 0.53 | 43.0 | 3.74e-01 | 93.0% | 62.6% |
| 5035147 | 304.4.1.18 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HapK | 0.52 | 43.0 | 3.77e-01 | 93.0% | 63.6% |
| 3699110 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.51 | 39.0 | 3.53e-01 | 93.0% | 59.0% |
| 3232285 | 213.1.1.57 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › BCCIP | 0.51 | 43.0 | 3.09e-01 | 100.0% | 84.3% |