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IMGVR_UViG_2528311097_000001-2528311097-2528599882
Arc-VirIMGVR_UViG_2528311097_000001-2528311097-2528599882
Identity
- Kingdom:
- archaea
Quality
61.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 195-294
D2
medium
residues 93-147
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.70 | 53.0 | 5.05e-01 | 100.0% | 69.2% |
| 3cvjC00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.67 | 54.0 | 3.50e-01 | 87.3% | 81.7% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.67 | 61.0 | 3.92e-01 | 100.0% | 47.1% |
| 2fnqA02 | 1.20.245.10 | Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 | 0.65 | 58.0 | 3.40e-01 | 98.2% | 40.7% |
| 3psfA02 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.64 | 58.0 | 4.23e-01 | 100.0% | 63.2% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.63 | 52.0 | 4.00e-01 | 94.5% | 94.0% |
| 3mwpB02 | 3.30.420.410 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Arenaviral nucleoprotein, C-terminal domain | 0.63 | 48.0 | 3.40e-01 | 83.6% | 28.3% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.63 | 55.0 | 4.18e-01 | 100.0% | 41.5% |
| 2lmlA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.62 | 53.0 | 4.58e-01 | 96.4% | 95.4% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.62 | 53.0 | 4.47e-01 | 96.4% | 88.3% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.62 | 52.0 | 4.17e-01 | 94.5% | 60.2% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 48.0 | 3.79e-01 | 87.3% | 97.5% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 54.0 | 3.93e-01 | 100.0% | 44.9% |
| 4zrmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 45.0 | 3.07e-01 | 80.0% | 24.9% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.60 | 52.0 | 4.91e-01 | 98.2% | 86.4% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 42.0 | 3.58e-01 | 76.4% | 52.3% |
| 1z4hA01 | 1.10.238.160 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.56 | 40.0 | 3.94e-01 | 90.9% | 72.4% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.56 | 46.0 | 3.32e-01 | 98.2% | 81.7% |
| 4gzcA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 39.0 | 3.03e-01 | 80.0% | 73.5% |
| 2ksvA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.53 | 39.0 | 2.79e-01 | 81.8% | 24.9% |
| 5ewtA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.53 | 44.0 | 2.87e-01 | 92.7% | 43.3% |
| 2q0xA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 2.91e-01 | 100.0% | 26.1% |
| 4o2hA00 | 3.10.450.610 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.06e-01 | 85.5% | 76.6% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.15e-01 | 94.5% | 47.7% |
| 7oq4Z01 | 1.20.120.950 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 | 0.51 | 40.0 | 3.44e-01 | 92.7% | 67.3% |
| 5g0aA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 38.0 | 2.49e-01 | 85.5% | 100.0% |
| 1fznD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.39e-01 | 100.0% | 69.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924446 | 2485.1.1.45 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 | 0.73 | 41.0 | 2.98e-01 | 94.5% | 20.7% |
| 3299467 | 170.2.1.25 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF7746 | 0.71 | 43.0 | 3.38e-01 | 94.5% | 30.9% |
| 3487622 | 7558.1.1.11 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C | 0.71 | 53.0 | 3.20e-01 | 100.0% | 11.6% |
| 5052532 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.68 | 52.0 | 4.36e-01 | 96.4% | 50.0% |
| 3812338 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 58.0 | 4.41e-01 | 96.4% | 83.1% |
| None | — | 0.67 | 57.0 | 3.33e-01 | 100.0% | 10.7% | |
| 3916642 | 192.2.1.56 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 | 0.65 | 56.0 | 4.02e-01 | 94.5% | 38.0% |
| 4976469 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.63 | 57.0 | 3.57e-01 | 100.0% | 67.1% |
| 4857394 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.63 | 57.0 | 4.32e-01 | 100.0% | 61.3% |
| 3244252 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.62 | 53.0 | 3.27e-01 | 94.5% | 49.2% |
| 3255441 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.60 | 51.0 | 3.89e-01 | 94.5% | 84.5% |
| 3598848 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 53.0 | 3.49e-01 | 100.0% | 48.1% |
| 3724474 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.60 | 45.0 | 2.64e-01 | 81.8% | 19.8% |
| 3531987 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 50.0 | 3.38e-01 | 94.5% | 62.4% |
| 3431346 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.59 | 52.0 | 3.24e-01 | 100.0% | 47.6% |
| 3205824 | 5050.1.1.15 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like | 0.58 | 52.0 | 3.42e-01 | 100.0% | 49.4% |
| 3690105 | 109.4.1.1399 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 | 0.58 | 52.0 | 2.82e-01 | 98.2% | 8.4% |
| 4002917 | 131.1.1.1 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I | 0.58 | 47.0 | 2.97e-01 | 100.0% | 60.3% |
| 4485514 | 327.5.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_3 | 0.57 | 49.0 | 3.73e-01 | 100.0% | 71.1% |
| 53152 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.57 | 47.0 | 3.05e-01 | 94.5% | 21.2% |
| 3988605 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.64e-01 | 78.2% | 98.8% |
| 3707191 | 109.4.1.451 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 | 0.56 | 49.0 | 3.04e-01 | 100.0% | 31.3% |
| 5048633 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 44.0 | 3.17e-01 | 87.3% | 48.1% |
| None | — | 0.55 | 46.0 | 3.66e-01 | 100.0% | 50.4% | |
| 4061408 | 109.4.1.1731 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N | 0.55 | 49.0 | 2.87e-01 | 100.0% | 11.7% |
| 3283240 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.55 | 42.0 | 2.83e-01 | 94.5% | 23.1% |
| 3967619 | 244.3.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD | 0.54 | 42.0 | 3.30e-01 | 85.5% | 98.3% |
| 4929178 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 44.0 | 3.00e-01 | 90.9% | 34.6% |
| 3343807 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 43.0 | 3.72e-01 | 94.5% | 56.5% |
| 3361603 | 101.1.9.111 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF28509 | 0.54 | 41.0 | 3.57e-01 | 92.7% | 71.0% |
| 3813732 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 39.0 | 2.76e-01 | 81.8% | 70.8% |
| 3800197 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.52 | 43.0 | 3.70e-01 | 92.7% | 63.3% |
| 4998596 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.52 | 45.0 | 2.81e-01 | 98.2% | 97.4% |
| 3219979 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.52 | 44.0 | 3.21e-01 | 100.0% | 34.5% |
| None | — | 0.51 | 40.0 | 3.20e-01 | 92.7% | 41.6% | |
| 5051539 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.50 | 44.0 | 3.51e-01 | 100.0% | 60.0% |
| 4966646 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 33.0 | 3.28e-01 | 76.4% | 63.3% |