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IMGVR_UViG_2529292698_000002-2529292698-2529621231

Arc-Vir

IMGVR_UViG_2529292698_000002-2529292698-2529621231

Identity

Kingdom:
archaea

Quality

92.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-76
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 49.0 3.94e-01 87.7% 59.6%
6yllA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 49.0 4.76e-01 89.0% 100.0%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 52.0 4.97e-01 98.6% 96.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 36.0 3.77e-01 89.0% 68.2%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.57 49.0 3.84e-01 98.6% 98.2%
3a7fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 4.34e-01 93.2% 86.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.36e-01 91.8% 57.5%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.56 36.0 4.07e-01 98.6% 100.0%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 4.13e-01 90.4% 77.4%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 45.0 4.55e-01 95.9% 95.9%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 32.0 3.75e-01 91.8% 91.3%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 45.0 3.81e-01 93.2% 90.2%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.54 41.0 3.30e-01 83.6% 94.0%
2fx5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 45.0 3.21e-01 100.0% 74.0%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 34.0 2.79e-01 80.8% 35.8%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.50e-01 91.8% 92.8%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.51e-01 90.4% 96.9%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.51 32.0 3.44e-01 100.0% 75.4%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.56e-01 91.8% 96.0%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.51 33.0 2.63e-01 95.9% 29.0%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 39.0 3.90e-01 83.6% 100.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966194 375.1.1.130 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.64 36.0 4.39e-01 90.4% 91.1%
3512529 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.61 52.0 4.14e-01 100.0% 58.1%
3241852 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 47.0 4.12e-01 100.0% 57.4%
4020386 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 47.0 3.59e-01 95.9% 76.3%
3186853 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.57 45.0 3.40e-01 89.0% 95.3%
3928940 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.56 49.0 3.84e-01 100.0% 63.6%
4959886 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.55 33.0 3.79e-01 89.0% 80.0%
3632777 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.55 46.0 3.37e-01 93.2% 47.6%
3931300 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 42.0 3.95e-01 100.0% 68.9%
4965851 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.54 33.0 3.66e-01 86.3% 80.0%
3344768 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.54 46.0 4.08e-01 100.0% 74.3%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.98e-01 91.8% 86.7%
4011286 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 43.0 3.47e-01 94.5% 60.0%
3649700 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 43.0 4.16e-01 95.9% 96.5%
4021359 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.52 37.0 2.88e-01 79.5% 67.6%
3631990 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 44.0 3.49e-01 100.0% 44.2%
4975535 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.50 38.0 3.73e-01 100.0% 73.8%
3548185 6.1.1.1 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 42.0 3.18e-01 93.2% 71.1%
4851915 6.1.1.1 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 42.0 3.45e-01 93.2% 90.4%
D2 high residues 79-143
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.68 44.0 3.48e-01 95.4% 31.9%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.65 43.0 4.96e-01 83.1% 97.8%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.63 39.0 3.02e-01 80.0% 26.8%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.58 41.0 4.29e-01 84.6% 80.3%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.58 50.0 4.17e-01 100.0% 75.2%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.58 48.0 3.64e-01 92.3% 41.7%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.64e-01 92.3% 44.9%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.24e-01 84.6% 45.3%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 4.02e-01 95.4% 82.5%
3luqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 36.0 3.05e-01 78.5% 39.5%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 45.0 3.64e-01 100.0% 46.0%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.22e-01 95.4% 38.3%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.30e-01 96.9% 45.5%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 45.0 3.57e-01 95.4% 49.3%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.52e-01 87.7% 48.3%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 44.0 3.34e-01 93.8% 41.6%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.77e-01 86.2% 42.5%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.58e-01 95.4% 75.4%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.31e-01 98.5% 59.1%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 2.93e-01 81.5% 34.5%
3kewB02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.51 40.0 3.24e-01 90.8% 93.1%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 31.0 2.45e-01 76.9% 26.2%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 36.0 3.50e-01 95.4% 67.6%
6x6aA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.55e-01 83.1% 28.8%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 40.0 3.38e-01 95.4% 67.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.50 35.0 3.92e-01 83.1% 100.0%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 37.0 3.08e-01 83.1% 47.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
397995 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.63 42.0 3.61e-01 81.5% 41.7%
3575222 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 36.0 3.74e-01 76.9% 60.0%
3312219 706.2.1.5 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › Tim44 0.63 47.0 4.60e-01 81.5% 95.7%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 48.0 4.43e-01 95.4% 67.1%
4661118 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.60 43.0 3.60e-01 80.0% 91.2%
3233965 59.1.1.9 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.59 47.0 3.96e-01 90.8% 55.8%
3426443 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.59 38.0 3.20e-01 83.1% 35.8%
3401205 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 2.88e-01 92.3% 20.9%
3702318 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 44.0 3.10e-01 86.2% 30.0%
5041726 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 46.0 4.18e-01 86.2% 65.9%
3814337 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 2.90e-01 92.3% 22.5%
3249225 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 48.0 3.65e-01 100.0% 51.2%
3206114 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 3.69e-01 95.4% 55.8%
5046747 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.55 46.0 2.89e-01 92.3% 17.8%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.81e-01 95.4% 51.7%
4626020 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 35.0 3.35e-01 78.5% 54.7%
3610972 330.1.1.22 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.55 39.0 3.21e-01 95.4% 38.5%
3445964 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 47.0 3.18e-01 100.0% 32.8%
3526610 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 44.0 3.23e-01 95.4% 39.0%
5078629 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.81e-01 93.8% 56.0%
4986976 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 43.0 3.60e-01 92.3% 50.0%
4149046 243.3.1.60 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5385 0.53 45.0 4.07e-01 100.0% 70.0%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.53 38.0 3.16e-01 93.8% 39.2%
3736998 4958.1.1.0 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.53 45.0 3.08e-01 95.4% 90.9%
3501834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.91e-01 100.0% 71.8%
4984611 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.52 38.0 2.71e-01 80.0% 29.6%
3270992 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 39.0 3.14e-01 83.1% 41.4%
5048398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.71e-01 95.4% 97.1%
3349337 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.52 37.0 3.40e-01 78.5% 80.6%
4856776 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 42.0 3.40e-01 92.3% 47.7%
3735309 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.57e-01 87.7% 61.1%
3777916 4956.1.1.0 a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.51 42.0 3.01e-01 95.4% 92.1%
4237486 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 40.0 3.19e-01 92.3% 71.0%
4988329 223.1.1.20 a+b three layers › Profilin-like › sensor domains › sensor domains › DUF3365 0.51 38.0 2.85e-01 84.6% 32.6%
5002475 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 39.0 2.52e-01 98.5% 15.8%
4236039 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.50 39.0 3.33e-01 92.3% 80.8%