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IMGVR_UViG_2529292698_000002-2529292698-2529621295
Arc-VirIMGVR_UViG_2529292698_000002-2529292698-2529621295
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-61
Domain cluster:
rep: IMGVR_UViG_3300025707_000259-3300025707-Ga0209667_100475710__D17-65
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.67 | 48.0 | 4.51e-01 | 89.5% | 61.6% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.65 | 54.0 | 3.25e-01 | 98.2% | 19.2% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.65 | 52.0 | 4.73e-01 | 87.7% | 98.7% |
| 1n4nA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.62 | 46.0 | 4.89e-01 | 86.0% | 100.0% |
| 4czuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 51.0 | 4.46e-01 | 100.0% | 69.6% |
| 2hw6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 50.0 | 4.45e-01 | 100.0% | 70.5% |
| 1jkzA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.59 | 43.0 | 4.49e-01 | 87.7% | 100.0% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 50.0 | 3.89e-01 | 100.0% | 45.9% |
| 1qdlA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.58 | 48.0 | 2.96e-01 | 100.0% | 21.7% |
| 1hr6A01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.57 | 43.0 | 3.02e-01 | 86.0% | 68.2% |
| 2plgA01 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 46.0 | 3.73e-01 | 100.0% | 45.5% |
| 3szeA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.57 | 51.0 | 2.86e-01 | 100.0% | 12.6% |
| 6fdyU01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 48.0 | 4.39e-01 | 100.0% | 80.0% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 49.0 | 3.83e-01 | 100.0% | 45.2% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 48.0 | 3.95e-01 | 100.0% | 51.4% |
| 4af3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 47.0 | 4.19e-01 | 100.0% | 72.7% |
| 1yxsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 46.0 | 4.07e-01 | 100.0% | 76.1% |
| 4efjA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 47.0 | 3.58e-01 | 100.0% | 39.3% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.55 | 42.0 | 3.71e-01 | 100.0% | 53.1% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 46.0 | 3.79e-01 | 100.0% | 81.6% |
| 1yqhA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.45e-01 | 82.5% | 83.7% |
| 4pwuC00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 43.0 | 3.94e-01 | 98.2% | 62.8% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 43.0 | 3.82e-01 | 94.7% | 59.6% |
| 3jsyA02 | 3.90.105.20 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Ribosomal protein L10, N-terminal fragment, domain II | 0.55 | 34.0 | 3.09e-01 | 77.2% | 42.5% |
| 4aeeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.57e-01 | 100.0% | 50.5% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.62e-01 | 84.2% | 91.4% |
| 2qh9A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.55 | 41.0 | 3.02e-01 | 84.2% | 94.4% |
| 2a6mA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.54 | 40.0 | 3.26e-01 | 87.7% | 86.9% |
| 2fyxA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.54 | 39.0 | 3.17e-01 | 84.2% | 77.7% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.53 | 39.0 | 3.78e-01 | 86.0% | 70.0% |
| 1vq3B00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.52 | 38.0 | 3.49e-01 | 82.5% | 85.7% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.40e-01 | 87.7% | 80.6% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.52 | 38.0 | 3.11e-01 | 84.2% | 81.3% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 3.22e-01 | 82.5% | 85.4% |
| 3hdiA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 43.0 | 3.00e-01 | 100.0% | 35.2% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4273411 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.74 | 52.0 | 4.99e-01 | 86.0% | 64.6% |
| 4493767 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.71 | 52.0 | 4.89e-01 | 86.0% | 64.3% |
| 4261832 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.71 | 48.0 | 4.63e-01 | 96.5% | 61.5% |
| 4622891 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.68 | 50.0 | 4.61e-01 | 89.5% | 60.0% |
| 4093818 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.68 | 51.0 | 4.69e-01 | 94.7% | 62.7% |
| 3946500 | 306.1.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Glucose permease domain IIB › Glucose permease domain IIB › PTS_EIIB | 0.67 | 45.0 | 4.11e-01 | 100.0% | 51.2% |
| 4126752 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.67 | 51.0 | 3.53e-01 | 87.7% | 23.6% |
| 4058379 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.66 | 45.0 | 4.34e-01 | 96.5% | 61.5% |
| 4324536 | 304.9.1.38 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc | 0.66 | 51.0 | 4.21e-01 | 98.2% | 45.5% |
| 4173742 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.66 | 50.0 | 4.67e-01 | 86.0% | 65.3% |
| 4295716 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.66 | 52.0 | 4.85e-01 | 86.0% | 95.7% |
| 4653000 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.65 | 51.0 | 4.76e-01 | 86.0% | 97.1% |
| 4477375 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.64 | 44.0 | 3.07e-01 | 71.9% | 93.7% |
| 4109532 | 304.9.1.178 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc, SET1_RBD | 0.64 | 49.0 | 3.23e-01 | 96.5% | 18.8% |
| 4190599 | 304.20.1.5 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f | 0.64 | 49.0 | 3.29e-01 | 87.7% | 22.4% |
| 4661896 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.64 | 44.0 | 4.29e-01 | 86.0% | 64.6% |
| 3648146 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.63 | 46.0 | 4.93e-01 | 86.0% | 100.0% |
| 4256195 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 42.0 | 3.02e-01 | 70.2% | 97.2% |
| 5000814 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 45.0 | 4.31e-01 | 94.7% | 67.7% |
| 4080161 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.62 | 47.0 | 4.35e-01 | 86.0% | 64.0% |
| 4048587 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.61 | 47.0 | 4.48e-01 | 86.0% | 100.0% |
| 4037308 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.60 | 49.0 | 4.34e-01 | 96.5% | 62.4% |
| 5081186 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.60 | 45.0 | 4.15e-01 | 82.5% | 64.0% |
| 5059624 | 11.1.5.49 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › bMG10 | 0.59 | 42.0 | 3.33e-01 | 80.7% | 34.6% |
| 3483046 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 4.12e-01 | 84.2% | 71.7% |
| 3863498 | 11.1.5.27 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep | 0.59 | 42.0 | 3.33e-01 | 86.0% | 34.6% |
| 5057038 | 304.20.1.4 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C | 0.58 | 47.0 | 3.48e-01 | 96.5% | 37.7% |
| 3404981 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.58 | 43.0 | 3.89e-01 | 96.5% | 56.5% |
| 4101334 | 304.28.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 | 0.57 | 43.0 | 3.77e-01 | 82.5% | 84.4% |
| 4953322 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.57 | 44.0 | 4.05e-01 | 87.7% | 66.3% |
| 3820700 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.57 | 42.0 | 3.58e-01 | 86.0% | 46.4% |
| 3481514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.40e-01 | 89.5% | 83.4% |
| 4940609 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.57 | 45.0 | 4.00e-01 | 89.5% | 63.5% |
| 3279326 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 51.0 | 4.34e-01 | 100.0% | 65.6% |
| 5053540 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.56 | 48.0 | 3.29e-01 | 100.0% | 87.9% |
| 4222799 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.56 | 48.0 | 3.61e-01 | 100.0% | 38.1% |
| 4380650 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.56 | 41.0 | 3.81e-01 | 84.2% | 62.5% |
| 394278 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.55 | 44.0 | 4.15e-01 | 96.5% | 83.1% |
| 5060355 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 41.0 | 3.56e-01 | 82.5% | 91.6% |
| 5082755 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 38.0 | 3.36e-01 | 80.7% | 46.7% |
| 5060415 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 40.0 | 3.47e-01 | 82.5% | 91.6% |
| 4997674 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.54 | 47.0 | 3.47e-01 | 100.0% | 39.4% |
| 4042122 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.54 | 46.0 | 4.38e-01 | 98.2% | 98.6% |
| 4958614 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 45.0 | 3.22e-01 | 100.0% | 83.2% |
| 4988836 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 47.0 | 3.44e-01 | 100.0% | 90.3% |
| 4223303 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.51 | 42.0 | 3.81e-01 | 100.0% | 65.9% |
| 3186882 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.51 | 41.0 | 2.57e-01 | 100.0% | 89.2% |
| 4309889 | 328.6.1.1 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase | 0.50 | 44.0 | 3.02e-01 | 100.0% | 34.6% |
| 4029616 | 306.9.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › MecA substrate binding domain › MecA substrate binding domain | 0.50 | 42.0 | 4.03e-01 | 100.0% | 90.0% |