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IMGVR_UViG_2529292698_000003-2529292698-2529621124

Arc-Vir

IMGVR_UViG_2529292698_000003-2529292698-2529621124

Identity

Kingdom:
archaea

Quality

96.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2av5A00 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.55 38.0 3.24e-01 73.3% 63.2%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 42.0 2.66e-01 88.3% 39.7%
3hr6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.26e-01 86.7% 58.1%
1mj4A00 3.10.120.10 Alpha Beta › Roll › Flavocytochrome B2; Chain A, domain 1 › Cytochrome b5-like heme/steroid binding domain 0.53 36.0 3.30e-01 70.0% 98.7%
2vvlA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.50 34.0 2.44e-01 73.3% 82.4%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 37.0 2.69e-01 85.0% 52.9%
4ekjA01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.50 41.0 3.15e-01 96.7% 50.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4267749 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.59 45.0 2.92e-01 85.0% 22.9%
4956514 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.58 47.0 3.86e-01 91.7% 75.7%
4939878 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.58 48.0 3.83e-01 95.0% 70.4%
4394244 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.57 47.0 3.83e-01 91.7% 73.0%
4113501 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.57 46.0 3.86e-01 91.7% 76.4%
4222275 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.57 40.0 2.42e-01 76.7% 81.7%
4947028 230.6.1.0 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain 0.57 47.0 4.00e-01 95.0% 83.5%
4600902 230.6.1.0 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain 0.56 46.0 3.87e-01 91.7% 80.0%
4988943 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.56 45.0 3.74e-01 91.7% 76.4%
5016688 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.56 46.0 3.74e-01 95.0% 71.7%
4937873 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.54 36.0 3.24e-01 70.0% 85.1%
4460725 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.54 36.0 3.20e-01 70.0% 84.2%
4196175 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.54 43.0 3.66e-01 91.7% 80.0%
4013928 2003.1.5.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran 0.53 36.0 2.36e-01 70.0% 37.2%
5058343 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.53 42.0 3.46e-01 93.3% 77.6%
5000634 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.53 41.0 3.39e-01 88.3% 69.2%
3700023 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.52 47.0 3.72e-01 100.0% 77.5%
4575494 206.1.1.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › IucA_IucC,FhuF 0.52 35.0 2.19e-01 73.3% 93.6%
4009220 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.52 46.0 2.86e-01 100.0% 30.6%
3976795 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.51 45.0 3.51e-01 100.0% 75.6%
3597898 5.1.11.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd 0.51 39.0 2.24e-01 90.0% 10.5%
4649099 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.51 44.0 3.34e-01 98.3% 62.7%
4983144 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.51 38.0 3.31e-01 86.7% 80.0%
3482847 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.50 44.0 3.46e-01 98.3% 79.2%