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IMGVR_UViG_2529292698_000003-2529292698-2529621146

Arc-Vir

IMGVR_UViG_2529292698_000003-2529292698-2529621146

Identity

Kingdom:
archaea

Quality

74.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-56
PDB
Domain cluster: rep: NC_055915.1__YP_010114651.1__KNV73_gp032__00239__D109-156
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yhoA02 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 50.0 3.87e-01 100.0% 65.0%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 39.0 3.70e-01 100.0% 54.8%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 2.91e-01 76.0% 74.9%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 43.0 3.41e-01 94.0% 38.1%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 41.0 3.72e-01 82.0% 66.7%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.56 46.0 3.87e-01 100.0% 54.7%
1yb3A00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 47.0 3.33e-01 100.0% 45.5%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 37.0 3.50e-01 100.0% 56.5%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.53e-01 100.0% 70.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.54 42.0 4.03e-01 96.0% 88.9%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.46e-01 100.0% 78.7%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.52 39.0 3.85e-01 100.0% 77.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3691622 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.46e-01 100.0% 66.7%
3309791 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 44.0 4.57e-01 90.0% 93.3%
3822212 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.58 42.0 4.33e-01 92.0% 90.9%
3203266 376.1.2.26 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 0.57 40.0 4.12e-01 92.0% 86.7%
3832663 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.56 42.0 4.05e-01 92.0% 71.7%
3822239 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.55 37.0 3.67e-01 72.0% 81.8%
3828760 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 39.0 3.97e-01 88.0% 93.3%
3217266 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.54 44.0 3.99e-01 98.0% 81.3%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.52 41.0 3.13e-01 94.0% 35.6%
3660614 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.52 38.0 3.64e-01 90.0% 66.2%
160842 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.28e-01 100.0% 65.4%
3317581 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 39.0 3.72e-01 90.0% 70.8%
3300175 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.52 37.0 3.65e-01 86.0% 81.7%
3606453 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 37.0 3.65e-01 88.0% 76.4%
D2 high residues 121-205
PDB
Domain cluster: rep: IMGVR_UViG_3300000160_000250-3300000160-SI48aug10_135mDRAFT_10008801__D26-100