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IMGVR_UViG_2529292698_000003-2529292698-2529621161

Arc-Vir

IMGVR_UViG_2529292698_000003-2529292698-2529621161

Identity

Kingdom:
archaea

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 121-228
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.66 61.0 5.45e-01 100.0% 78.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.50 28.0 2.49e-01 92.6% 35.5%
3b1bA01 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.50 42.0 3.16e-01 95.4% 64.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038875 4166.1.1.0 beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like 0.79 68.0 6.69e-01 100.0% 85.2%
3555586 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.57 33.0 3.48e-01 100.0% 63.2%
3401290 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 31.0 3.08e-01 95.4% 53.3%
D2 high residues 249-430
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4el6A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.53 23.0 3.06e-01 84.1% 73.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
223446 72.1.1.8 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › IL4_i_Ig 0.53 25.0 3.20e-01 91.2% 74.5%
3268696 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.51 36.0 4.08e-01 75.8% 95.0%
D3 high residues 734-847
PDB
D4 medium residues 605-668
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 56.0 4.46e-01 89.1% 40.8%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 58.0 4.62e-01 89.1% 45.8%
2qguA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 53.0 4.58e-01 93.8% 52.5%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 50.0 4.79e-01 89.1% 65.8%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.68 54.0 3.92e-01 98.4% 31.1%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.66 54.0 4.26e-01 89.1% 75.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 4.35e-01 85.9% 64.8%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.64 41.0 3.26e-01 82.8% 30.1%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.06e-01 98.4% 46.9%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 55.0 3.81e-01 100.0% 44.0%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.63 42.0 3.42e-01 70.3% 33.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.63 51.0 4.09e-01 93.8% 45.3%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 47.0 3.95e-01 81.2% 71.1%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 4.01e-01 90.6% 44.7%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.62 53.0 4.46e-01 98.4% 68.1%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 4.44e-01 89.1% 68.4%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 55.0 3.87e-01 100.0% 41.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 4.10e-01 89.1% 59.3%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.58e-01 90.6% 38.0%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 51.0 4.54e-01 100.0% 71.4%
2rqxA00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 49.0 4.51e-01 89.1% 87.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 4.34e-01 85.9% 79.0%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 3.89e-01 98.4% 43.5%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.59 49.0 3.81e-01 96.9% 90.3%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.18e-01 95.3% 30.7%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 49.0 3.99e-01 96.9% 50.8%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.59 51.0 3.15e-01 96.9% 34.4%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 4.37e-01 90.6% 66.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.58 50.0 4.06e-01 96.9% 68.5%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.57 46.0 3.54e-01 90.6% 83.1%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 4.09e-01 98.4% 66.1%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.71e-01 95.3% 55.6%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.56 46.0 3.53e-01 96.9% 39.1%
2qxlB05 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.56 48.0 3.90e-01 98.4% 80.3%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 46.0 3.42e-01 96.9% 42.1%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 47.0 3.48e-01 98.4% 43.4%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.60e-01 84.4% 82.6%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 38.0 3.67e-01 87.5% 62.5%
3qktD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.02e-01 100.0% 36.2%
1autC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.41e-01 89.1% 82.1%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.53 43.0 3.41e-01 96.9% 73.5%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 43.0 3.51e-01 93.8% 92.9%
4dolA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.52 43.0 3.38e-01 98.4% 73.1%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 43.0 3.02e-01 100.0% 94.9%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.52 43.0 3.42e-01 98.4% 46.0%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.87e-01 100.0% 33.1%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 2.88e-01 95.3% 81.6%
2oz4A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.25e-01 73.4% 61.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928895 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.91 86.0 5.46e-01 100.0% 25.0%
4929919 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.73 52.0 4.53e-01 84.4% 49.5%
4026173 10.1.1.21 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.72 55.0 3.85e-01 93.8% 26.7%
4784456 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.70 52.0 5.41e-01 90.6% 87.9%
184879 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.68 54.0 3.98e-01 96.9% 31.8%
3418985 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.67 52.0 3.73e-01 93.8% 28.2%
5053966 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 53.0 4.88e-01 89.1% 68.2%
3980770 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.66 57.0 4.29e-01 100.0% 41.2%
3739310 3321.1.1.1 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.65 54.0 4.01e-01 92.2% 65.6%
4959385 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.65 46.0 4.44e-01 85.9% 65.3%
3642733 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.65 50.0 3.25e-01 84.4% 37.0%
3521083 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 54.0 3.41e-01 92.2% 27.0%
3618632 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.64 55.0 3.50e-01 98.4% 25.4%
3976580 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.64 52.0 3.98e-01 98.4% 37.9%
3704922 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.31e-01 92.2% 36.5%
4983588 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 51.0 4.89e-01 92.2% 76.0%
185414 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.63 51.0 4.10e-01 93.8% 45.7%
4937627 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 4.44e-01 90.6% 61.1%
3948116 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.62 53.0 4.22e-01 96.9% 48.1%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.62 52.0 4.04e-01 98.4% 94.8%
3303238 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.61 53.0 4.39e-01 100.0% 76.7%
4968653 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.61 45.0 4.02e-01 85.9% 53.7%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 52.0 3.87e-01 100.0% 93.7%
4102293 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.61 45.0 3.28e-01 81.2% 41.1%
3273903 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.60 51.0 3.26e-01 98.4% 54.6%
3069457 1053.1.1.0 beta barrels › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain 0.60 43.0 4.56e-01 78.1% 91.2%
3440037 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.02e-01 90.6% 38.0%
4981544 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 2.75e-01 95.3% 59.0%
3742459 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.59 49.0 4.33e-01 96.9% 75.0%
4104949 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 43.0 3.71e-01 98.4% 48.6%
3454685 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 51.0 3.22e-01 100.0% 44.0%
3278208 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.57 50.0 3.06e-01 98.4% 20.7%
3781523 243.1.1.42 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MMU163 0.57 46.0 3.58e-01 90.6% 41.3%
1346676 3347.1.1.1 beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › DUF3836 0.57 48.0 4.09e-01 98.4% 66.1%
4030034 109.4.1.1140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.56 42.0 2.56e-01 84.4% 17.0%
3340584 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.56 41.0 3.38e-01 87.5% 42.5%
3514681 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.56 40.0 4.10e-01 76.6% 81.7%
3939966 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 44.0 3.76e-01 90.6% 75.5%
3780836 5.1.4.257 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 0.55 46.0 2.82e-01 95.3% 33.7%
5041112 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 37.0 3.69e-01 84.4% 67.1%
3684458 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.83e-01 90.6% 32.3%
3961706 4.1.1.161 beta barrels › SH3 › SH3 › SH3 › DUF4178 0.54 41.0 4.17e-01 85.9% 84.6%
3708150 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 2.83e-01 93.8% 39.2%
3622366 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 38.0 4.16e-01 82.8% 100.0%
3607725 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.74e-01 93.8% 36.3%
4085332 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.53 39.0 2.81e-01 82.8% 73.6%
4024016 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.44e-01 89.1% 57.6%
3744012 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.52 38.0 2.50e-01 84.4% 44.7%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 42.0 3.55e-01 95.3% 75.0%
3233389 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.51 41.0 2.61e-01 93.8% 24.0%
3719860 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 34.0 2.91e-01 70.3% 75.7%
4463632 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.50 40.0 3.62e-01 89.1% 62.2%
4639080 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 43.0 3.41e-01 95.3% 55.4%