←Back to structures
IMGVR_UViG_2529292733_000001-2529292733-2529763336
Arc-VirIMGVR_UViG_2529292733_000001-2529292733-2529763336
Identity
- Kingdom:
- archaea
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-84
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.90 | 51.0 | 3.33e-01 | 74.1% | 15.1% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.87 | 46.0 | 4.74e-01 | 79.0% | 55.8% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.78 | 54.0 | 3.79e-01 | 71.6% | 90.5% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 43.0 | 3.69e-01 | 79.0% | 36.7% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.73 | 50.0 | 3.99e-01 | 70.4% | 70.3% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.67 | 50.0 | 4.11e-01 | 77.8% | 47.5% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 41.0 | 3.75e-01 | 71.6% | 100.0% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.59 | 45.0 | 3.71e-01 | 82.7% | 49.7% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.51 | 35.0 | 3.46e-01 | 70.4% | 100.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3625044 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.84 | 50.0 | 4.53e-01 | 81.5% | 46.7% |
| 3780286 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.84 | 51.0 | 3.00e-01 | 87.7% | 8.8% |
| 3841109 | 192.29.1.293 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SHCBP_N | 0.82 | 41.0 | 3.76e-01 | 76.5% | 40.0% |
| 3224003 | 9001.1.1.3 ↗ | alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT | 0.81 | 42.0 | 4.24e-01 | 72.8% | 51.2% |
| 3184698 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.79 | 53.0 | 5.10e-01 | 80.2% | 62.2% |
| 3733141 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 52.0 | 4.16e-01 | 71.6% | 46.2% |
| 5024245 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.67 | 51.0 | 4.51e-01 | 80.2% | 58.2% |
| 3859640 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 56.0 | 4.19e-01 | 95.1% | 70.0% |
| 4463205 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.60 | 47.0 | 2.82e-01 | 81.5% | 16.9% |
| None | — | 0.54 | 49.0 | 3.58e-01 | 100.0% | 61.8% |
D2
high
residues 100-187
Domain cluster:
rep: MT104122.1__QIG62552.1__X__00038__D20-102
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sfuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 51.0 | 5.58e-01 | 93.2% | 85.7% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 58.0 | 5.91e-01 | 100.0% | 86.9% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 54.0 | 5.43e-01 | 98.9% | 75.9% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 57.0 | 5.71e-01 | 100.0% | 83.0% |
| 4e70A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 5.20e-01 | 97.7% | 70.3% |
| 4p9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 45.0 | 5.05e-01 | 90.9% | 91.0% |
| 3h0dA01 | 3.30.56.130 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain | 0.64 | 47.0 | 5.11e-01 | 88.6% | 97.2% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 47.0 | 4.69e-01 | 100.0% | 82.8% |
| 3dluA00 | 3.30.56.30 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit | 0.55 | 39.0 | 3.83e-01 | 75.0% | 75.8% |
| 1qzzA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 39.0 | 3.19e-01 | 92.0% | 39.6% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 36.0 | 3.52e-01 | 78.4% | 64.9% |
| 3qa8A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 4.27e-01 | 86.4% | 90.4% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 30.0 | 3.25e-01 | 94.3% | 65.8% |
| 1el6A02 | 2.20.20.20 | Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain | 0.52 | 28.0 | 3.61e-01 | 79.5% | 100.0% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.64e-01 | 89.8% | 77.5% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 38.0 | 2.92e-01 | 79.5% | 80.0% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 38.0 | 3.84e-01 | 80.7% | 79.1% |
| 3g88A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 40.0 | 3.01e-01 | 100.0% | 32.2% |
| 5kckA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.51 | 38.0 | 2.51e-01 | 81.8% | 24.8% |
| 3e8oB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.51e-01 | 78.4% | 66.0% |
| 1xdzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 2.93e-01 | 100.0% | 31.9% |
| 4wsqB00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 41.0 | 2.85e-01 | 90.9% | 45.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3276386 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 54.0 | 5.97e-01 | 92.0% | 92.9% |
| 3593170 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 52.0 | 5.56e-01 | 92.0% | 85.3% |
| 5053790 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.72 | 55.0 | 5.44e-01 | 100.0% | 76.8% |
| 4614032 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.72 | 54.0 | 5.63e-01 | 100.0% | 88.7% |
| 3716370 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 58.0 | 5.95e-01 | 95.5% | 90.6% |
| 3983446 | 101.1.2.84 ↗ | alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA | 0.69 | 56.0 | 5.41e-01 | 100.0% | 78.0% |
| 5050738 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 47.0 | 4.04e-01 | 92.0% | 44.1% |
| 3271898 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.67 | 56.0 | 3.71e-01 | 100.0% | 22.2% |
| 4008897 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 55.0 | 4.92e-01 | 100.0% | 65.0% |
| 5063691 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.67 | 47.0 | 4.80e-01 | 92.0% | 76.5% |
| 1761875 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.66 | 48.0 | 5.02e-01 | 100.0% | 84.0% |
| 4023624 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.65 | 58.0 | 5.34e-01 | 100.0% | 83.5% |
| 4937570 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 57.0 | 5.41e-01 | 100.0% | 81.9% |
| 3989576 | 101.1.2.80 ↗ | alpha arrays › HTH › HTH › winged helix domain › RepA_N | 0.64 | 56.0 | 5.04e-01 | 100.0% | 69.6% |
| 4562408 | 101.1.2.76 ↗ | alpha arrays › HTH › HTH › winged helix domain › CtsR | 0.64 | 48.0 | 5.05e-01 | 95.5% | 94.7% |
| 5033725 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.63 | 47.0 | 4.85e-01 | 92.0% | 82.4% |
| 3987881 | 101.1.2.76 ↗ | alpha arrays › HTH › HTH › winged helix domain › CtsR | 0.63 | 45.0 | 4.76e-01 | 92.0% | 89.3% |
| 3574338 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.63 | 55.0 | 3.99e-01 | 100.0% | 66.7% |
| 4954889 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.62 | 41.0 | 4.48e-01 | 86.4% | 89.2% |
| 3182450 | 101.1.2.493 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26557 | 0.62 | 52.0 | 4.84e-01 | 96.6% | 73.6% |
| 3953113 | 101.1.2.246 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_PafC | 0.61 | 47.0 | 4.21e-01 | 100.0% | 56.9% |
| 3496383 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 52.0 | 4.85e-01 | 100.0% | 83.5% |
| 5002609 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 51.0 | 4.98e-01 | 100.0% | 90.5% |
| 3972091 | 101.1.2.668 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28010 | 0.58 | 42.0 | 4.49e-01 | 93.2% | 92.0% |
| 4209016 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 33.0 | 2.51e-01 | 95.5% | 23.0% |
| 4029468 | 3156.3.1.0 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family | 0.53 | 42.0 | 3.61e-01 | 88.6% | 58.7% |
| 4979626 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 44.0 | 3.94e-01 | 98.9% | 63.8% |
| 3719372 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 44.0 | 2.87e-01 | 93.2% | 81.5% |
| 3943515 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.51 | 32.0 | 3.32e-01 | 85.2% | 67.5% |
| 3282364 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.51 | 36.0 | 3.60e-01 | 80.7% | 70.5% |
| 4933755 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 41.0 | 3.68e-01 | 98.9% | 63.2% |
| 3987392 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.50 | 37.0 | 3.53e-01 | 83.0% | 64.5% |
| 3933395 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.50 | 33.0 | 3.37e-01 | 79.5% | 69.4% |