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IMGVR_UViG_2529292733_000001-2529292733-2529763341

Arc-Vir

IMGVR_UViG_2529292733_000001-2529292733-2529763341

Identity

Kingdom:
archaea

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-91
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 47.0 4.31e-01 77.0% 73.7%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.60 54.0 4.36e-01 100.0% 94.4%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 45.0 3.16e-01 86.5% 76.8%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 43.0 2.81e-01 79.7% 41.7%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 45.0 3.81e-01 91.9% 84.8%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.53 38.0 2.82e-01 78.4% 81.5%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 39.0 3.84e-01 81.1% 98.7%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 2.93e-01 97.3% 30.7%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 38.0 3.63e-01 81.1% 75.8%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 47.0 4.01e-01 100.0% 64.7%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.22e-01 77.0% 80.3%
2bmoA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.51 43.0 2.94e-01 100.0% 87.7%
4p6qA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 43.0 4.05e-01 98.6% 95.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3512520 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 39.0 4.91e-01 98.6% 100.0%
5022218 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.65 47.0 4.00e-01 75.7% 67.8%
4935672 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.62 48.0 3.92e-01 83.8% 75.7%
3586067 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 47.0 4.37e-01 82.4% 98.9%
4954188 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 47.0 3.84e-01 85.1% 71.8%
None — 0.61 45.0 3.27e-01 81.1% 94.3%
4989863 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 45.0 3.68e-01 81.1% 72.9%
5015865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 45.0 3.76e-01 85.1% 77.9%
5022231 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 3.46e-01 82.4% 44.0%
4975834 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.57 47.0 3.76e-01 100.0% 47.4%
3183646 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.57 45.0 4.45e-01 91.9% 83.1%
4009192 109.4.1.3151 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30106, PF30107 0.55 45.0 3.17e-01 93.2% 33.1%
3377172 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 41.0 3.36e-01 79.7% 48.1%
3705646 109.4.1.1564 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28736, PF28737 0.55 42.0 2.56e-01 82.4% 17.8%
5037919 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.55 44.0 2.79e-01 90.5% 45.1%
185296 862.1.1.4 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.55 47.0 3.55e-01 100.0% 50.3%
3424690 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.54 43.0 2.88e-01 89.2% 23.1%
4337802 109.4.1.1444 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14, TPR_16 0.53 44.0 3.67e-01 91.9% 59.2%
4993876 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.52 47.0 3.76e-01 100.0% 52.6%
None — 0.52 41.0 3.72e-01 87.8% 73.3%
135076 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.51 47.0 4.11e-01 100.0% 69.4%
3965042 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.51 46.0 3.97e-01 100.0% 68.7%
4976716 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.94e-01 79.7% 100.0%
4065989 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.50 40.0 3.63e-01 89.2% 71.4%