←Back to structures
IMGVR_UViG_2529293100_000004-2529293100-2531221083
Arc-VirIMGVR_UViG_2529293100_000004-2529293100-2531221083
Identity
- Kingdom:
- archaea
Quality
85.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-103
Domain cluster:
rep: IMGVR_UViG_3300005925_000020-3300005925-Ga0075133_1011442__D188-280
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 32.0 | 3.76e-01 | 75.0% | 69.0% |
| 1u2kA01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.59 | 40.0 | 3.43e-01 | 70.0% | 76.8% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 51.0 | 4.03e-01 | 100.0% | 77.5% |
| 4giwB00 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.55 | 41.0 | 3.51e-01 | 80.0% | 98.8% |
| 2w9yA00 | 1.20.120.1100 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 38.0 | 3.48e-01 | 99.0% | 52.9% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.54 | 38.0 | 3.84e-01 | 99.0% | 73.2% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 47.0 | 4.26e-01 | 100.0% | 96.5% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.53 | 40.0 | 3.54e-01 | 81.0% | 71.5% |
| 2nwlC00 | 1.10.3860.10 | Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter | 0.53 | 37.0 | 2.56e-01 | 73.0% | 77.7% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 36.0 | 3.28e-01 | 72.0% | 56.6% |
| 4aihF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.82e-01 | 100.0% | 72.2% |
| 3k8pC01 | 1.20.58.1440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.85e-01 | 80.0% | 92.4% |
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.51 | 40.0 | 3.61e-01 | 98.0% | 60.1% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.50 | 40.0 | 3.64e-01 | 86.0% | 76.6% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 39.0 | 3.66e-01 | 87.0% | 83.3% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961908 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.97 | 72.0 | 8.14e-01 | 76.0% | 97.5% |
| 4962044 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.95 | 88.0 | 6.18e-01 | 100.0% | 35.9% |
| 4932085 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 61.0 | 7.12e-01 | 76.0% | 97.3% |
| 4954371 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 59.0 | 6.98e-01 | 72.0% | 100.0% |
| 5005290 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.86 | 59.0 | 7.15e-01 | 72.0% | 100.0% |
| 4966198 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.86 | 80.0 | 5.78e-01 | 98.0% | 97.2% |
| 5026084 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 73.0 | 7.46e-01 | 100.0% | 97.9% |
| 5035003 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.81 | 76.0 | 7.48e-01 | 100.0% | 94.3% |
| 4940124 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.76 | 68.0 | 4.74e-01 | 100.0% | 31.7% |
| 4933370 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.74 | 60.0 | 6.29e-01 | 85.0% | 100.0% |
| 4125245 | 101.1.2.813 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF772 | 0.74 | 68.0 | 6.63e-01 | 100.0% | 93.6% |
| 3954386 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.73 | 68.0 | 6.45e-01 | 100.0% | 92.2% |
| 4010299 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 67.0 | 4.64e-01 | 100.0% | 94.5% |
| 5005232 | 2484.1.1.332 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 | 0.72 | 64.0 | 4.55e-01 | 96.0% | 96.9% |
| 3965831 | 101.1.3.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF772 | 0.70 | 61.0 | 5.74e-01 | 94.0% | 91.7% |
| 3964125 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.69 | 62.0 | 5.78e-01 | 100.0% | 92.0% |
| 5008406 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 62.0 | 6.25e-01 | 100.0% | 100.0% |
| 3455559 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 50.0 | 5.15e-01 | 94.0% | 87.4% |
| 3444766 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.63 | 50.0 | 5.13e-01 | 96.0% | 88.4% |
| 3908710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 50.0 | 5.11e-01 | 96.0% | 89.5% |
| 3645968 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 48.0 | 4.91e-01 | 93.0% | 87.4% |
| 3819780 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 47.0 | 4.74e-01 | 93.0% | 86.0% |
| 3448424 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 48.0 | 4.76e-01 | 97.0% | 84.8% |
| 3645108 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.59 | 53.0 | 3.62e-01 | 100.0% | 82.0% |
| 3354568 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 52.0 | 5.11e-01 | 100.0% | 97.3% |
| 3913534 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.58 | 52.0 | 4.55e-01 | 100.0% | 81.9% |
| 4556247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 53.0 | 3.91e-01 | 99.0% | 96.4% |
| 5036454 | 3896.1.2.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase | 0.58 | 40.0 | 3.85e-01 | 71.0% | 61.7% |
| 3459616 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 51.0 | 3.98e-01 | 100.0% | 90.0% |
| 3830929 | 101.1.1.340 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF28509 | 0.57 | 50.0 | 4.51e-01 | 100.0% | 84.8% |
| 3466656 | 2484.1.1.149 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Plant_tran | 0.57 | 50.0 | 3.71e-01 | 100.0% | 96.0% |
| 3419225 | 101.1.10.56 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF28509 | 0.56 | 46.0 | 4.48e-01 | 100.0% | 83.6% |
| 2137645 | 101.4.1.1 ↗ | alpha arrays › HTH › RPB10 › RPB10 › RNA_pol_N | 0.56 | 33.0 | 3.87e-01 | 76.0% | 85.7% |
| 3910986 | 109.4.1.304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4495 | 0.55 | 42.0 | 2.53e-01 | 80.0% | 15.4% |
| 3343807 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 43.0 | 4.52e-01 | 96.0% | 100.0% |
| 4954002 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.54 | 44.0 | 3.46e-01 | 90.0% | 78.1% |
| 3670113 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.54 | 44.0 | 4.60e-01 | 91.0% | 98.9% |
| 3596199 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.53 | 41.0 | 3.80e-01 | 84.0% | 79.3% |
| 3317519 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 38.0 | 4.16e-01 | 98.0% | 100.0% |
| 3520694 | 192.22.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 | 0.51 | 36.0 | 3.37e-01 | 73.0% | 69.6% |
| 3614344 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.50 | 44.0 | 2.91e-01 | 100.0% | 81.3% |