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IMGVR_UViG_2547132059_000002-2547132059-2547235252

Arc-Vir

IMGVR_UViG_2547132059_000002-2547132059-2547235252

Identity

Kingdom:
archaea

Quality

90.2 mean pLDDT

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-127
PDB
Domain cluster: rep: S2_009_000_R2_scaffold_143_prodigal-single.1__X__X__00197__D70-160
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02086.22 best MethyltransfD12 26.6 6.70e-06 100.0% 40.0%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q0sA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.91 79.0 8.26e-01 98.1% 98.9%
2g1pA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.85 78.0 7.95e-01 100.0% 100.0%
2dpmA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.79 72.0 7.28e-01 100.0% 100.0%
4nmlA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 30.0 3.18e-01 79.8% 63.3%
4xxlA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 33.0 3.52e-01 100.0% 73.9%
5afdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.32e-01 100.0% 68.3%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 39.0 3.87e-01 97.1% 78.2%
3qybA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.50 35.0 3.22e-01 71.2% 95.5%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4585065 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.99 94.0 5.56e-01 100.0% 16.5%
4241513 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.97 93.0 6.36e-01 100.0% 34.6%
9374 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.92 82.0 5.87e-01 100.0% 37.1%
4200568 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.90 86.0 6.04e-01 100.0% 37.5%
4006858 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.85 78.0 5.54e-01 100.0% 36.6%
4988477 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.83 75.0 5.31e-01 100.0% 35.4%
5025561 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.83 74.0 5.35e-01 100.0% 36.9%
4949366 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.82 76.0 5.36e-01 100.0% 38.7%
4392983 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.81 76.0 5.42e-01 100.0% 37.2%
4950762 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.81 71.0 5.11e-01 100.0% 35.9%
4482107 2003.1.5.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 0.80 74.0 5.22e-01 100.0% 36.7%
3291545 3859.1.1.0 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.57 40.0 3.79e-01 73.1% 96.0%
2794554 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.56 46.0 3.73e-01 88.5% 72.3%
4016908 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.42e-01 70.2% 88.7%
3182705 320.4.1.0 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain 0.55 38.0 3.51e-01 73.1% 91.4%
3223818 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.52 33.0 3.98e-01 82.7% 95.7%
3250267 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.52 41.0 3.23e-01 84.6% 60.0%
3571438 109.4.1.266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG 0.52 40.0 2.59e-01 84.6% 26.2%
4477827 2004.1.1.472 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD, P-loop_SecA 0.52 41.0 2.64e-01 87.5% 46.9%
5761 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.51 41.0 3.47e-01 89.4% 68.1%
5060418 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 32.0 3.15e-01 93.3% 55.0%
D2 high residues 142-252
PDB
Domain cluster: rep: putative_DNA_N6-adenine_methyltransferase__YP_003969980__Cafeteria_roenbergensis_virus_BV-PW1__693272__D56-156
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02086.22 best MethyltransfD12 32.7 8.70e-08 82.9% 28.6%