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IMGVR_UViG_2554235473_000004-2554235473-2556083112
Arc-VirIMGVR_UViG_2554235473_000004-2554235473-2556083112
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-111
Domain cluster:
rep: MH643778.1__AXN52981.1__PAER24_00640__00064__D2-111
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04073.21 best | tRNA_edit | 63.8 | 2.20e-17 | 91.1% | 73.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2z0xA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.91 | 83.0 | 6.96e-01 | 100.0% | 61.8% |
| 1dbuA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.89 | 83.0 | 7.08e-01 | 100.0% | 65.1% |
| 1wdvA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.89 | 80.0 | 6.91e-01 | 100.0% | 64.7% |
| 1vjfA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.88 | 83.0 | 6.85e-01 | 100.0% | 64.5% |
| 2j3lA03 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.85 | 76.0 | 6.61e-01 | 100.0% | 66.0% |
| 3memA01 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.84 | 78.0 | 6.84e-01 | 100.0% | 69.7% |
| 3op6A00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.84 | 77.0 | 6.69e-01 | 100.0% | 67.8% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 34.0 | 3.37e-01 | 98.0% | 52.3% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 31.0 | 3.48e-01 | 90.1% | 77.5% |
| 3kfvA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 45.0 | 4.05e-01 | 100.0% | 84.4% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058227 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.94 | 88.0 | 7.48e-01 | 100.0% | 65.3% |
| 5057908 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.93 | 86.0 | 7.21e-01 | 100.0% | 62.6% |
| 4983798 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.93 | 86.0 | 7.27e-01 | 100.0% | 64.1% |
| 4936981 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.93 | 84.0 | 7.17e-01 | 100.0% | 63.6% |
| 4999044 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.92 | 84.0 | 7.09e-01 | 100.0% | 62.3% |
| 3588001 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.92 | 88.0 | 7.42e-01 | 100.0% | 65.8% |
| 4998768 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.92 | 84.0 | 7.30e-01 | 99.0% | 66.9% |
| 4030991 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.92 | 85.0 | 7.17e-01 | 100.0% | 63.2% |
| 3964648 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.92 | 84.0 | 7.09e-01 | 100.0% | 63.0% |
| 3285957 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 84.0 | 7.14e-01 | 100.0% | 63.6% |
| 3592207 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 86.0 | 7.13e-01 | 100.0% | 66.1% |
| 3589616 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 87.0 | 7.35e-01 | 100.0% | 66.2% |
| 5058424 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 84.0 | 7.08e-01 | 100.0% | 63.2% |
| 432593 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 83.0 | 6.97e-01 | 100.0% | 61.8% |
| 3969194 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 85.0 | 6.83e-01 | 100.0% | 56.6% |
| 4991814 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 84.0 | 7.35e-01 | 100.0% | 70.0% |
| 3284797 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.91 | 84.0 | 7.07e-01 | 100.0% | 63.2% |
| 3594683 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.91 | 86.0 | 6.93e-01 | 100.0% | 62.3% |
| 3969678 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.90 | 85.0 | 7.12e-01 | 100.0% | 67.5% |
| 4004721 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.90 | 86.0 | 7.16e-01 | 100.0% | 64.4% |
| 3506158 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.90 | 84.0 | 7.01e-01 | 100.0% | 62.3% |
| 5010845 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.90 | 82.0 | 7.11e-01 | 100.0% | 67.4% |
| 3354546 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.89 | 84.0 | 6.98e-01 | 100.0% | 66.1% |
| 5039425 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.89 | 85.0 | 7.11e-01 | 100.0% | 63.9% |
| 7515 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.89 | 80.0 | 6.91e-01 | 100.0% | 64.7% |
| 4962514 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.89 | 83.0 | 6.97e-01 | 100.0% | 63.3% |
| 4028261 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.89 | 83.0 | 6.90e-01 | 100.0% | 64.8% |
| 5040451 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 83.0 | 7.05e-01 | 100.0% | 64.9% |
| 3987589 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 84.0 | 7.17e-01 | 100.0% | 67.3% |
| 5048810 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 83.0 | 6.95e-01 | 100.0% | 66.9% |
| 3957325 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 76.0 | 6.57e-01 | 100.0% | 62.8% |
| 4666679 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 79.0 | 6.83e-01 | 100.0% | 65.5% |
| 3969250 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 80.0 | 6.85e-01 | 100.0% | 64.7% |
| 4851946 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 83.0 | 6.96e-01 | 100.0% | 67.9% |
| 4257815 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 82.0 | 6.93e-01 | 100.0% | 67.9% |
| 4580010 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 79.0 | 7.05e-01 | 100.0% | 71.1% |
| 2099779 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.88 | 82.0 | 6.80e-01 | 100.0% | 64.1% |
| 3291159 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.87 | 79.0 | 6.76e-01 | 100.0% | 63.4% |
| 3712661 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.87 | 83.0 | 6.45e-01 | 100.0% | 61.0% |
| 3251157 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.87 | 82.0 | 6.63e-01 | 100.0% | 68.7% |
| 4137434 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.87 | 78.0 | 6.82e-01 | 100.0% | 66.2% |
| 3781034 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.87 | 82.0 | 7.05e-01 | 100.0% | 76.0% |
| 4532380 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.87 | 73.0 | 6.66e-01 | 100.0% | 69.2% |
| 4680539 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 76.0 | 6.66e-01 | 100.0% | 66.4% |
| 4072170 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 78.0 | 6.75e-01 | 100.0% | 66.2% |
| 4178120 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 79.0 | 6.79e-01 | 100.0% | 65.3% |
| 4640512 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 80.0 | 6.93e-01 | 100.0% | 68.3% |
| 4347677 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 77.0 | 6.73e-01 | 100.0% | 66.2% |
| 4122356 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 76.0 | 6.85e-01 | 100.0% | 70.4% |
| 4446778 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 75.0 | 6.60e-01 | 100.0% | 66.4% |
| 4103294 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 81.0 | 6.40e-01 | 100.0% | 65.8% |
| 3973747 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 79.0 | 7.00e-01 | 100.0% | 70.7% |
| 5030478 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 81.0 | 6.88e-01 | 100.0% | 65.2% |
| 4490074 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.86 | 77.0 | 6.99e-01 | 100.0% | 73.8% |
| 4326135 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.85 | 78.0 | 6.71e-01 | 100.0% | 65.3% |
| 3704928 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.85 | 80.0 | 6.65e-01 | 100.0% | 64.6% |
| 4385357 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.85 | 78.0 | 7.02e-01 | 100.0% | 73.3% |
| 3589678 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.85 | 76.0 | 6.65e-01 | 100.0% | 66.9% |
| 139245 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.84 | 78.0 | 6.82e-01 | 100.0% | 69.2% |
| 4229014 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.84 | 76.0 | 6.61e-01 | 100.0% | 66.9% |
| 140656 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.84 | 77.0 | 6.67e-01 | 100.0% | 67.3% |
| 3174891 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.84 | 78.0 | 6.82e-01 | 100.0% | 75.9% |
| 4261348 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.83 | 77.0 | 6.78e-01 | 100.0% | 71.4% |
| 4556330 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.83 | 77.0 | 6.51e-01 | 100.0% | 71.2% |
| 3840114 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.83 | 78.0 | 6.77e-01 | 100.0% | 69.7% |
| 4202856 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.82 | 77.0 | 6.39e-01 | 100.0% | 72.7% |
| 4294728 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.81 | 74.0 | 6.29e-01 | 100.0% | 63.9% |
| 4600936 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.80 | 73.0 | 6.56e-01 | 100.0% | 73.3% |
| 4398411 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.80 | 74.0 | 6.53e-01 | 100.0% | 71.4% |
| 4063480 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.80 | 73.0 | 6.03e-01 | 100.0% | 58.2% |
| 4049320 | 299.1.1.0 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain | 0.77 | 71.0 | 5.98e-01 | 99.0% | 71.9% |
| 4341306 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.76 | 70.0 | 6.12e-01 | 100.0% | 69.0% |