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IMGVR_UViG_2554235473_000004-2554235473-2556083139

Arc-Vir

IMGVR_UViG_2554235473_000004-2554235473-2556083139

Identity

Kingdom:
archaea

Quality

95.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-110
PDB
Domain cluster: rep: IMGVR_UViG_3300025344_000001-3300025344-Ga0208772_100041104__D3-118
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.72 51.0 5.63e-01 73.1% 100.0%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 40.0 4.95e-01 72.2% 85.9%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.68 30.0 3.98e-01 71.3% 73.8%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.63 49.0 5.37e-01 95.4% 98.9%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 47.0 5.00e-01 94.4% 94.7%
6grrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 4.48e-01 77.8% 86.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 4.44e-01 81.5% 95.1%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 44.0 3.14e-01 82.4% 44.0%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.28e-01 75.9% 84.3%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.30e-01 75.9% 89.1%
1ksiA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.33e-01 75.0% 89.6%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 43.0 3.16e-01 83.3% 84.6%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.55 31.0 3.95e-01 71.3% 96.8%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.89e-01 73.1% 77.8%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 39.0 3.54e-01 77.8% 91.9%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 37.0 3.23e-01 98.1% 47.4%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.00e-01 98.1% 49.7%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 46.0 3.19e-01 98.1% 44.9%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 46.0 3.35e-01 100.0% 40.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 39.0 3.28e-01 98.1% 49.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 46.0 4.25e-01 100.0% 80.7%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 45.0 3.38e-01 100.0% 99.3%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 34.0 3.18e-01 70.4% 91.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992633 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.80 53.0 6.36e-01 70.4% 98.7%
4993827 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.76 52.0 5.98e-01 70.4% 100.0%
5062732 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.75 53.0 5.86e-01 72.2% 95.3%
4938265 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.70 39.0 5.09e-01 71.3% 98.3%
3168452 331.10.2.3 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.66 40.0 4.08e-01 90.7% 61.9%
5041833 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 41.0 5.04e-01 71.3% 100.0%
5014687 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 39.0 4.94e-01 88.9% 100.0%
4031110 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 39.0 3.72e-01 71.3% 51.2%
5019887 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.65 41.0 4.84e-01 75.9% 93.2%
4122018 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.64 39.0 4.05e-01 90.7% 65.0%
4973793 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.64 44.0 4.87e-01 74.1% 85.6%
5044805 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 40.0 4.84e-01 74.1% 97.1%
3286735 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.63 41.0 4.59e-01 78.7% 84.7%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.63 40.0 4.55e-01 73.1% 86.3%
1170463 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 41.0 4.45e-01 81.5% 79.1%
3518523 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 47.0 3.41e-01 78.7% 33.0%
3465939 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.62 47.0 3.19e-01 78.7% 30.4%
5014685 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 37.0 4.63e-01 74.1% 100.0%
5054991 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.61 45.0 3.52e-01 77.8% 91.0%
4934603 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 42.0 4.74e-01 74.1% 92.9%
5029202 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.60 44.0 4.89e-01 92.6% 100.0%
6427 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.59 43.0 4.60e-01 75.9% 90.5%
5014690 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 42.0 4.66e-01 100.0% 95.3%
4993981 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.58 41.0 4.70e-01 75.9% 98.8%
3466402 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 42.0 3.27e-01 78.7% 64.7%
3743052 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.55 42.0 2.81e-01 82.4% 24.9%
5028231 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.54 45.0 4.53e-01 91.7% 91.2%
3811762 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 40.0 2.92e-01 82.4% 32.6%
3199490 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.52 45.0 2.67e-01 94.4% 15.6%
5040298 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 47.0 3.08e-01 99.1% 35.8%
5040209 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.50 45.0 3.01e-01 99.1% 37.9%
5022798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 44.0 2.87e-01 96.3% 27.1%