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IMGVR_UViG_2554235483_000003-2554235483-2556122398
Arc-VirIMGVR_UViG_2554235483_000003-2554235483-2556122398
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 42-53_140-231
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gkgA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.59 | 28.0 | 3.47e-01 | 78.8% | 70.1% |
| 2l6lA02 | 3.10.660.10 | Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger | 0.51 | 30.0 | 3.65e-01 | 72.1% | 93.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083372 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.62 | 48.0 | 5.30e-01 | 91.3% | 100.0% |
| 1557493 | 4056.1.1.6 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel | 0.61 | 45.0 | 5.02e-01 | 91.3% | 98.8% |
| 3977478 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.58 | 51.0 | 5.21e-01 | 93.3% | 99.0% |
| 5082725 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.58 | 51.0 | 5.21e-01 | 93.3% | 98.0% |
| 3981484 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.57 | 49.0 | 5.06e-01 | 91.3% | 99.0% |
| 3726502 | 2.1.1.86 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 | 0.55 | 28.0 | 2.91e-01 | 76.9% | 48.0% |
| 4017435 | 243.5.1.2 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN3 | 0.53 | 35.0 | 3.22e-01 | 83.7% | 52.6% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.51 | 36.0 | 4.02e-01 | 94.2% | 97.5% |
D2
medium
residues 54-139_232-244_359-406
Domain cluster:
rep: JQ312117.1__AFH19810.1__7-7-1_000113__00112__D28-125_313-371
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gc8B00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.60 | 36.0 | 3.39e-01 | 85.7% | 48.9% |
| 3qtaB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.55 | 35.0 | 3.20e-01 | 83.0% | 46.7% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 35.0 | 3.61e-01 | 94.6% | 70.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980619 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.78 | 74.0 | 5.60e-01 | 100.0% | 90.3% |
| 5083373 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.76 | 71.0 | 5.72e-01 | 98.0% | 92.3% |
| 5082726 | 4038.1.1.7 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 | 0.76 | 71.0 | 5.73e-01 | 98.0% | 93.8% |
| 3964357 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.73 | 67.0 | 5.24e-01 | 98.0% | 83.4% |
| 4030791 | 4038.1.1.2 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_prot_Gp6 | 0.72 | 68.0 | 5.07e-01 | 100.0% | 88.1% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.71 | 65.0 | 5.18e-01 | 98.0% | 85.8% |
| 4954546 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.70 | 65.0 | 5.09e-01 | 98.0% | 83.8% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.69 | 64.0 | 4.98e-01 | 100.0% | 94.1% |
| 3164784 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.66 | 62.0 | 4.82e-01 | 100.0% | 92.0% |
| 5082483 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.66 | 61.0 | 5.49e-01 | 98.0% | 98.5% |
| 3589399 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.61 | 53.0 | 4.33e-01 | 95.9% | 96.4% |
D3
medium
residues 245-314