Back to structures

IMGVR_UViG_2554235495_000004-2554235495-2556165224

Arc-Vir

IMGVR_UViG_2554235495_000004-2554235495-2556165224

Identity

Kingdom:
archaea

Quality

71.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-57
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.88 74.0 5.62e-01 100.0% 42.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 70.0 6.45e-01 100.0% 73.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 69.0 6.18e-01 100.0% 66.7%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 63.0 6.28e-01 100.0% 87.5%
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.77 50.0 5.59e-01 91.5% 91.2%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.63e-01 93.6% 88.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.73 61.0 5.76e-01 100.0% 80.0%
3bfmA02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.40e-01 91.5% 83.7%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.72e-01 100.0% 85.7%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 52.0 3.18e-01 80.9% 22.9%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.70 54.0 3.69e-01 85.1% 62.8%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.69 56.0 3.67e-01 89.4% 38.3%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.41e-01 100.0% 93.7%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 53.0 4.01e-01 89.4% 76.6%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.68 53.0 3.55e-01 83.0% 29.5%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.44e-01 97.9% 100.0%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 56.0 5.31e-01 100.0% 78.0%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 52.0 3.19e-01 85.1% 23.7%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.67 55.0 4.52e-01 100.0% 49.0%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.18e-01 100.0% 100.0%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 56.0 5.30e-01 97.9% 96.5%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 45.0 2.94e-01 74.5% 16.4%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 48.0 4.12e-01 78.7% 88.2%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 50.0 3.72e-01 87.2% 69.5%
2cknA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 50.0 3.97e-01 83.0% 93.7%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.65 52.0 4.28e-01 91.5% 80.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.89e-01 100.0% 83.8%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 49.0 3.21e-01 85.1% 41.2%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 54.0 3.44e-01 93.6% 59.6%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.52e-01 97.9% 85.3%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.77e-01 97.9% 93.5%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 53.0 4.65e-01 100.0% 84.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.56e-01 100.0% 90.3%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.62 49.0 2.97e-01 87.2% 30.5%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 3.89e-01 100.0% 37.6%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.61 43.0 3.60e-01 80.9% 42.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.60e-01 97.9% 91.7%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 49.0 4.72e-01 93.6% 90.9%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 2.90e-01 93.6% 60.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.60 45.0 3.26e-01 83.0% 53.6%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.59 51.0 3.40e-01 100.0% 49.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.50e-01 100.0% 82.1%
4qarA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 42.0 2.81e-01 83.0% 19.5%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 47.0 2.89e-01 100.0% 15.0%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 47.0 3.27e-01 97.9% 94.9%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 48.0 2.94e-01 100.0% 15.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.11e-01 97.9% 70.3%
1z6hA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 45.0 3.96e-01 91.5% 87.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 42.0 4.17e-01 100.0% 86.5%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 47.0 3.35e-01 100.0% 62.7%
2ejmA01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 43.0 3.93e-01 91.5% 92.6%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.55 45.0 4.37e-01 100.0% 82.5%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.25e-01 93.6% 43.3%
2dn8A01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 40.0 3.60e-01 91.5% 75.0%
1bdoA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 39.0 3.48e-01 93.6% 80.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 38.0 3.14e-01 95.7% 81.8%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 38.0 3.85e-01 91.5% 93.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5063433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 69.0 6.78e-01 100.0% 86.0%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 75.0 6.66e-01 100.0% 73.8%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 75.0 6.66e-01 100.0% 73.8%
5074749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 69.0 6.04e-01 100.0% 62.9%
4953913 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.82 70.0 6.45e-01 100.0% 75.0%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 69.0 6.08e-01 100.0% 64.3%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 73.0 6.39e-01 100.0% 69.6%
4347922 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 73.0 6.70e-01 100.0% 80.0%
145704 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.81 66.0 6.13e-01 100.0% 72.4%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 67.0 6.06e-01 100.0% 67.7%
4974211 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.78 66.0 6.15e-01 100.0% 76.7%
3164374 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.78 62.0 6.15e-01 97.9% 84.0%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 67.0 6.07e-01 100.0% 73.8%
4139778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 66.0 5.73e-01 100.0% 67.1%
4995694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.11e-01 100.0% 87.3%
4647213 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.75 56.0 5.98e-01 93.6% 95.0%
4065466 220.1.1.150 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.73 60.0 5.03e-01 91.5% 87.5%
4112791 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.71 52.0 5.15e-01 80.9% 100.0%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.67e-01 100.0% 92.7%
3289164 295.1.1.25 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 0.69 56.0 4.32e-01 91.5% 90.0%
4278911 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.69 50.0 4.96e-01 80.9% 100.0%
3263489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.35e-01 100.0% 89.2%
3628460 3308.1.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.69 51.0 4.29e-01 80.9% 96.2%
5038496 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.67 46.0 4.88e-01 80.9% 87.5%
4937731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.28e-01 97.9% 78.3%
3586825 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.23e-01 91.5% 25.7%
3964033 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 53.0 5.29e-01 100.0% 92.0%
3925408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.30e-01 97.9% 92.0%
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 54.0 4.89e-01 100.0% 66.7%
3926017 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.25e-01 100.0% 87.3%
540 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.65 55.0 5.48e-01 100.0% 100.0%
5980 227.1.1.9 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF 0.65 49.0 3.83e-01 85.1% 85.5%
158911 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 53.0 4.38e-01 100.0% 68.0%
3927663 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.92e-01 100.0% 72.3%
2893010 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.64 53.0 5.15e-01 97.9% 90.7%
3959003 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.64 45.0 3.86e-01 78.7% 58.8%
3710823 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.08e-01 100.0% 88.0%
3933788 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.94e-01 100.0% 86.7%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.82e-01 97.9% 83.3%
4960280 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 49.0 4.10e-01 93.6% 81.1%
3924149 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.05e-01 100.0% 92.0%
4999513 244.2.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.62 44.0 4.36e-01 76.6% 86.0%
3858171 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.61 44.0 2.82e-01 78.7% 30.2%
4116754 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 45.0 4.57e-01 100.0% 86.7%
3554209 6148.1.1.1 few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.61 42.0 4.42e-01 89.4% 87.5%
4170351 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 47.0 4.17e-01 93.6% 57.3%
3509403 6129.1.1.0 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.59 42.0 2.69e-01 76.6% 25.5%
3507338 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.58e-01 100.0% 78.3%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.59 46.0 4.24e-01 100.0% 64.6%
3827152 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.57 46.0 3.87e-01 91.5% 75.0%
3606151 59.1.1.10 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 0.55 42.0 3.17e-01 89.4% 90.8%
3797424 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 41.0 3.01e-01 100.0% 86.7%