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IMGVR_UViG_2554235495_000004-2554235495-2556165244
Arc-VirIMGVR_UViG_2554235495_000004-2554235495-2556165244
Identity
- Kingdom:
- archaea
Quality
81.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-73
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.65 | 58.0 | 4.14e-01 | 100.0% | 92.9% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 51.0 | 4.62e-01 | 97.0% | 64.1% |
| 4clfA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.63 | 55.0 | 4.04e-01 | 100.0% | 95.7% |
| 6bjqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 49.0 | 4.47e-01 | 92.5% | 63.6% |
| 4cllA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.63 | 55.0 | 3.91e-01 | 100.0% | 81.9% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 34.0 | 4.09e-01 | 91.0% | 89.5% |
| 2lssA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 35.0 | 3.48e-01 | 97.0% | 51.4% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.61 | 48.0 | 3.63e-01 | 89.6% | 97.8% |
| 1wc1C00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.60 | 51.0 | 3.83e-01 | 100.0% | 95.8% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 43.0 | 3.99e-01 | 97.0% | 58.2% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.59 | 33.0 | 3.24e-01 | 91.0% | 47.9% |
| 4c23B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 48.0 | 3.42e-01 | 94.0% | 90.2% |
| 3abiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 42.0 | 3.12e-01 | 76.1% | 54.8% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 45.0 | 3.54e-01 | 85.1% | 56.8% |
| 1xexB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 40.0 | 3.06e-01 | 85.1% | 29.8% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 32.0 | 3.89e-01 | 97.0% | 97.3% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.57 | 44.0 | 4.57e-01 | 98.5% | 95.1% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.57 | 46.0 | 3.41e-01 | 94.0% | 92.8% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.57 | 48.0 | 4.15e-01 | 97.0% | 60.4% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 42.0 | 3.22e-01 | 85.1% | 39.3% |
| 4eeeA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 3.81e-01 | 91.0% | 66.1% |
| 5is8A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.55 | 49.0 | 3.50e-01 | 98.5% | 92.5% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 46.0 | 3.49e-01 | 98.5% | 64.2% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 41.0 | 2.90e-01 | 83.6% | 81.6% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.54 | 34.0 | 3.33e-01 | 82.1% | 55.1% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 42.0 | 3.28e-01 | 89.6% | 39.5% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 36.0 | 2.70e-01 | 74.6% | 49.7% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.52 | 32.0 | 3.75e-01 | 94.0% | 100.0% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 43.0 | 3.46e-01 | 95.5% | 75.0% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.52 | 40.0 | 2.98e-01 | 91.0% | 54.5% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 43.0 | 3.30e-01 | 98.5% | 65.3% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 41.0 | 3.16e-01 | 86.6% | 66.7% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 43.0 | 3.94e-01 | 100.0% | 86.2% |
| 2p84A01 | 2.60.430.10 | Mainly Beta › Sandwich › YopX-like fold › YopX-like domain | 0.51 | 37.0 | 3.88e-01 | 76.1% | 96.7% |
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.41e-01 | 79.1% | 62.1% |
| 2o18A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.50 | 38.0 | 2.54e-01 | 85.1% | 18.6% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.88 | 80.0 | 7.99e-01 | 100.0% | 95.7% |
| 5077887 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.75 | 66.0 | 4.64e-01 | 100.0% | 97.7% |
| 4076804 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.72 | 38.0 | 4.21e-01 | 91.0% | 63.6% |
| 3418892 | 5.1.8.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 | 0.69 | 38.0 | 3.14e-01 | 97.0% | 31.3% |
| 3403944 | 210.1.1.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N | 0.69 | 61.0 | 4.13e-01 | 100.0% | 80.4% |
| 5064574 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.69 | 37.0 | 3.97e-01 | 91.0% | 58.3% |
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.68 | 37.0 | 4.04e-01 | 91.0% | 63.6% |
| 3999390 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.68 | 59.0 | 4.12e-01 | 100.0% | 84.1% |
| 3714703 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.67 | 38.0 | 3.32e-01 | 94.0% | 37.0% |
| 4667581 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.64 | 48.0 | 4.35e-01 | 85.1% | 58.9% |
| 3636596 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 37.0 | 4.16e-01 | 94.0% | 76.0% |
| 4531585 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.64 | 54.0 | 3.71e-01 | 97.0% | 70.8% |
| 3672898 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.64 | 46.0 | 3.77e-01 | 77.6% | 51.2% |
| 2641638 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.63 | 56.0 | 3.88e-01 | 100.0% | 83.3% |
| 4403464 | 386.1.1.77 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › OrsD | 0.61 | 44.0 | 3.47e-01 | 74.6% | 43.8% |
| 5065441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 37.0 | 4.08e-01 | 89.6% | 77.4% |
| 3698302 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 43.0 | 4.74e-01 | 76.1% | 90.9% |
| 3985617 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 39.0 | 3.93e-01 | 100.0% | 64.3% |
| 4953724 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 44.0 | 3.80e-01 | 82.1% | 65.7% |
| 3918288 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 41.0 | 3.75e-01 | 80.6% | 54.7% |
| 4477197 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.57 | 41.0 | 2.72e-01 | 77.6% | 18.1% |
| 3243593 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.57 | 49.0 | 4.31e-01 | 100.0% | 88.6% |
| 5025256 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 45.0 | 2.91e-01 | 91.0% | 32.7% |
| 3250988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 44.0 | 3.90e-01 | 85.1% | 62.0% |
| 4978175 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.57 | 42.0 | 3.21e-01 | 82.1% | 73.7% |
| 3605369 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 38.0 | 4.20e-01 | 100.0% | 89.1% |
| 3595827 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 41.0 | 2.83e-01 | 83.6% | 44.4% |
| 3709649 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.52 | 45.0 | 3.68e-01 | 100.0% | 56.9% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.51 | 37.0 | 3.20e-01 | 79.1% | 50.9% |
| 3386302 | 3186.1.1.1 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook | 0.50 | 37.0 | 3.46e-01 | 79.1% | 88.2% |
| 3479055 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.50 | 43.0 | 3.33e-01 | 97.0% | 100.0% |