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IMGVR_UViG_2554235495_000004-2554235495-2556165267
Arc-VirIMGVR_UViG_2554235495_000004-2554235495-2556165267
Identity
- Kingdom:
- archaea
Quality
72.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-59
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.69 | 59.0 | 4.11e-01 | 100.0% | 65.2% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.69 | 56.0 | 4.92e-01 | 94.2% | 78.0% |
| 5zctA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.67 | 52.0 | 4.85e-01 | 98.1% | 68.2% |
| 5eliA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 55.0 | 4.32e-01 | 98.1% | 63.4% |
| 7agpA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.63 | 46.0 | 4.45e-01 | 80.8% | 100.0% |
| 5z9sA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 50.0 | 3.81e-01 | 88.5% | 56.1% |
| 1a9xA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 49.0 | 4.55e-01 | 98.1% | 67.1% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 48.0 | 3.89e-01 | 94.2% | 54.5% |
| 2byeA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 52.0 | 4.33e-01 | 100.0% | 55.4% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 50.0 | 3.95e-01 | 100.0% | 92.2% |
| 1tvgA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 50.0 | 3.75e-01 | 92.3% | 38.2% |
| 2yc2A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 48.0 | 3.69e-01 | 92.3% | 37.9% |
| 1djsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 4.08e-01 | 96.2% | 52.9% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 4.06e-01 | 88.5% | 95.1% |
| 2kd7A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 50.0 | 3.57e-01 | 96.2% | 32.1% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 49.0 | 3.89e-01 | 98.1% | 82.1% |
| 3nngA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 46.0 | 3.45e-01 | 96.2% | 36.6% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 45.0 | 4.30e-01 | 98.1% | 72.3% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.57 | 47.0 | 4.19e-01 | 100.0% | 80.5% |
| 5nfiB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 46.0 | 3.56e-01 | 98.1% | 48.1% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.57 | 45.0 | 3.33e-01 | 98.1% | 38.4% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 38.0 | 3.09e-01 | 71.2% | 86.0% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.56 | 46.0 | 4.42e-01 | 98.1% | 90.2% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.55 | 44.0 | 4.08e-01 | 92.3% | 90.0% |
| 5adxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 40.0 | 2.91e-01 | 82.7% | 80.7% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.55 | 37.0 | 2.74e-01 | 73.1% | 40.9% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.54 | 42.0 | 4.41e-01 | 86.5% | 100.0% |
| 3bzvB00 | 3.40.1690.10 | Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU | 0.53 | 46.0 | 4.03e-01 | 100.0% | 67.5% |
| 2ew0A00 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.50 | 40.0 | 2.97e-01 | 100.0% | 85.1% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.50 | 42.0 | 3.76e-01 | 100.0% | 65.4% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734833 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.84 | 70.0 | 5.75e-01 | 90.4% | 100.0% |
| 3250014 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 56.0 | 4.02e-01 | 75.0% | 50.0% |
| 3593735 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.76 | 58.0 | 5.40e-01 | 82.7% | 100.0% |
| 3194942 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.72 | 61.0 | 4.36e-01 | 96.2% | 35.7% |
| 3465504 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.72 | 55.0 | 5.65e-01 | 100.0% | 90.0% |
| 4972013 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.69 | 54.0 | 4.74e-01 | 86.5% | 87.5% |
| 3606028 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.69 | 58.0 | 4.50e-01 | 96.2% | 44.9% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.69 | 59.0 | 5.81e-01 | 100.0% | 100.0% |
| 3796583 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 46.0 | 3.46e-01 | 76.9% | 26.8% |
| 3274364 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.67 | 54.0 | 5.57e-01 | 96.2% | 100.0% |
| 5069190 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 57.0 | 4.41e-01 | 98.1% | 47.5% |
| 3233728 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.66 | 57.0 | 4.38e-01 | 100.0% | 50.4% |
| 3262232 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 56.0 | 4.28e-01 | 96.2% | 48.3% |
| 3471014 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 56.0 | 4.34e-01 | 98.1% | 51.7% |
| 3531090 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.65 | 44.0 | 3.08e-01 | 75.0% | 21.1% |
| 3606070 | 7032.1.1.0 ↗ | a+b two layers › Paratox › Paratox › Paratox | 0.65 | 49.0 | 4.76e-01 | 100.0% | 73.3% |
| 3556471 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.65 | 54.0 | 4.26e-01 | 98.1% | 44.5% |
| 3887430 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.64 | 52.0 | 3.81e-01 | 94.2% | 49.3% |
| 3488745 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.63 | 53.0 | 4.22e-01 | 96.2% | 65.5% |
| 3945340 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.63 | 49.0 | 3.63e-01 | 88.5% | 34.7% |
| 5052820 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 44.0 | 3.09e-01 | 76.9% | 34.7% |
| 1130 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.62 | 50.0 | 3.75e-01 | 92.3% | 38.2% |
| 3391838 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.61 | 51.0 | 3.68e-01 | 96.2% | 60.0% |
| 5062623 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.61 | 47.0 | 3.36e-01 | 100.0% | 25.9% |
| 3790958 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.59 | 50.0 | 3.92e-01 | 96.2% | 60.0% |
| 3989300 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.59 | 48.0 | 3.97e-01 | 100.0% | 90.0% |
| 4364088 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.59 | 42.0 | 4.36e-01 | 80.8% | 100.0% |
| 4926801 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 51.0 | 3.81e-01 | 100.0% | 47.4% |
| 2529893 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.58 | 46.0 | 4.24e-01 | 88.5% | 100.0% |
| 3472541 | 10.32.1.184 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II | 0.58 | 46.0 | 3.83e-01 | 90.4% | 50.0% |
| 3646906 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 44.0 | 3.85e-01 | 100.0% | 96.8% |
| 3728553 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 44.0 | 3.66e-01 | 90.4% | 51.6% |
| 3881319 | 11.1.1.798 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_1st | 0.55 | 44.0 | 3.12e-01 | 98.1% | 53.8% |
| 3400015 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.54 | 36.0 | 2.90e-01 | 75.0% | 30.8% |
| 5005349 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 2.46e-01 | 92.3% | 10.7% |
| 3415245 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.53 | 45.0 | 3.05e-01 | 96.2% | 25.0% |
| 5049518 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 37.0 | 2.82e-01 | 75.0% | 76.7% |
| 3593266 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 41.0 | 2.98e-01 | 100.0% | 55.5% |
| 4277768 | 223.2.1.52 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › GAP1-N2 | 0.51 | 35.0 | 2.69e-01 | 75.0% | 31.7% |
| 3648091 | 220.1.1.182 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd | 0.50 | 37.0 | 2.79e-01 | 80.8% | 40.0% |