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IMGVR_UViG_2554235495_000005-2554235495-2556168301

Arc-Vir

IMGVR_UViG_2554235495_000005-2554235495-2556168301

Identity

Kingdom:
archaea

Quality

61.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-202
PDB
Domain cluster: rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14550.12 best Peptidase_S78_2 48.7 1.20e-12 58.5% 83.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1at3A00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.71 51.0 4.75e-01 100.0% 60.8%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.63 33.0 4.17e-01 100.0% 84.9%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 29.0 3.73e-01 100.0% 78.8%
8d8lF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 32.0 3.84e-01 100.0% 76.4%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 31.0 4.10e-01 100.0% 96.8%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 31.0 4.07e-01 100.0% 93.9%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 31.0 4.01e-01 100.0% 91.0%
2d1cA02 3.30.70.1570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.76e-01 100.0% 82.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 30.0 4.03e-01 100.0% 98.9%
2cpfA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 27.0 3.48e-01 99.5% 83.7%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 25.0 3.22e-01 100.0% 76.9%
3wnzA04 3.90.1170.60 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › 0.52 28.0 3.67e-01 87.4% 96.9%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 20.0 2.90e-01 91.3% 82.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964948 1.1.16.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 0.92 60.0 7.38e-01 98.4% 96.8%
3954964 50.1.1.3 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 0.82 61.0 6.86e-01 100.0% 95.9%
3585229 50.1.1.2 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.78 58.0 6.69e-01 99.5% 99.3%
5003309 50.1.1.0 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.78 54.0 6.40e-01 97.8% 99.2%
788 50.1.1.1 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 0.71 51.0 4.75e-01 100.0% 60.8%
3166306 50.1.1.4 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.70 55.0 6.06e-01 98.4% 96.7%
3945977 50.1.1.4 ↗ beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.68 57.0 6.05e-01 100.0% 97.6%
4436655 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.61 32.0 3.74e-01 100.0% 71.2%
3227523 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 33.0 3.87e-01 100.0% 73.8%
4929491 304.5.1.13 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.60 33.0 4.05e-01 100.0% 86.2%
3956965 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 29.0 3.05e-01 100.0% 48.6%
3232018 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.58 31.0 3.48e-01 100.0% 64.8%
4808079 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.58 31.0 3.89e-01 100.0% 87.6%
3268425 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 27.0 1.96e-01 100.0% 14.7%
4230916 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.57 30.0 3.70e-01 100.0% 81.7%
3933223 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.56 31.0 3.63e-01 100.0% 74.6%
4025700 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 29.0 3.64e-01 98.9% 82.7%
3953553 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.54 31.0 3.94e-01 99.5% 97.1%
2725012 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.53 29.0 3.16e-01 100.0% 60.4%
4971359 304.51.1.12 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6_N 0.52 29.0 3.77e-01 97.3% 97.0%
5077376 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.51 33.0 3.92e-01 100.0% 96.0%