←Back to structures
IMGVR_UViG_2554235497_000003-2554235497-2556172810
Arc-VirIMGVR_UViG_2554235497_000003-2554235497-2556172810
Identity
- Kingdom:
- archaea
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-81
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ej7H00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.79 | 32.0 | 3.78e-01 | 87.2% | 53.7% |
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.78 | 31.0 | 3.52e-01 | 87.2% | 46.8% |
| 6ogmD00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.77 | 31.0 | 3.56e-01 | 85.9% | 47.5% |
| 2x4kA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.73 | 32.0 | 3.56e-01 | 88.5% | 50.0% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 33.0 | 3.84e-01 | 80.8% | 70.9% |
| 4iilA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 46.0 | 3.85e-01 | 82.1% | 92.7% |
| 2i0fA00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.57 | 44.0 | 3.64e-01 | 84.6% | 93.2% |
| 1tjyA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 44.0 | 3.55e-01 | 87.2% | 75.5% |
| 3rotA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 44.0 | 3.70e-01 | 85.9% | 92.6% |
| 3g85A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 42.0 | 3.57e-01 | 84.6% | 86.7% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.55 | 32.0 | 2.97e-01 | 89.7% | 42.0% |
| 2wh5A00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.55 | 42.0 | 4.09e-01 | 83.3% | 87.8% |
| 1c41A00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.55 | 42.0 | 3.39e-01 | 85.9% | 84.2% |
| 4kv7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 39.0 | 2.96e-01 | 78.2% | 84.0% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.54 | 40.0 | 3.71e-01 | 80.8% | 80.8% |
| 2h0aA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 41.0 | 3.66e-01 | 84.6% | 90.2% |
| 3au5A03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.53 | 41.0 | 3.63e-01 | 83.3% | 83.0% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 33.0 | 3.48e-01 | 98.7% | 72.1% |
| 1hbkA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 40.0 | 3.87e-01 | 83.3% | 86.5% |
| 4fdxB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 31.0 | 3.39e-01 | 100.0% | 71.9% |
| 4n1kD00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 35.0 | 3.32e-01 | 94.9% | 57.4% |
| 2yc4C00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 3.05e-01 | 82.1% | 87.6% |
| 4bs9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 40.0 | 3.02e-01 | 85.9% | 67.8% |
| 3l8uA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.51 | 41.0 | 3.34e-01 | 89.7% | 92.9% |
| 3h79A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 35.0 | 3.10e-01 | 79.5% | 47.8% |
| 4rk6A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 35.0 | 3.06e-01 | 88.5% | 45.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080188 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.77 | 32.0 | 3.65e-01 | 87.2% | 50.0% |
| 4418026 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.60 | 46.0 | 3.45e-01 | 84.6% | 70.5% |
| 4382041 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.59 | 40.0 | 4.31e-01 | 100.0% | 84.6% |
| 3473483 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 40.0 | 4.07e-01 | 97.4% | 73.3% |
| 3182714 | 2003.1.11.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh | 0.58 | 43.0 | 3.59e-01 | 80.8% | 93.1% |
| 3290966 | 2007.1.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DJ-1_PfpI | 0.57 | 45.0 | 3.38e-01 | 87.2% | 83.8% |
| 3792259 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.56 | 44.0 | 3.21e-01 | 84.6% | 76.8% |
| 3946041 | 315.1.1.5 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_2 | 0.55 | 32.0 | 3.57e-01 | 96.2% | 73.3% |
| 3879813 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.55 | 42.0 | 3.71e-01 | 83.3% | 66.7% |
| 3224291 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.55 | 43.0 | 3.77e-01 | 83.3% | 70.4% |
| 55608 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.54 | 42.0 | 4.06e-01 | 83.3% | 88.4% |
| 3928936 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.54 | 42.0 | 3.68e-01 | 83.3% | 70.4% |
| 3630457 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.54 | 42.0 | 3.56e-01 | 83.3% | 62.3% |
| 4934120 | 2002.1.1.418 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF7388 | 0.54 | 43.0 | 2.99e-01 | 88.5% | 98.5% |
| 5056024 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.54 | 32.0 | 3.14e-01 | 98.7% | 50.0% |
| 4927828 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.54 | 35.0 | 3.29e-01 | 100.0% | 53.0% |
| 3854329 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.53 | 41.0 | 3.47e-01 | 83.3% | 62.3% |
| 4989438 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.53 | 32.0 | 3.53e-01 | 96.2% | 76.3% |
| 4120681 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.53 | 41.0 | 3.36e-01 | 85.9% | 78.7% |
| 3267287 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.52 | 41.0 | 3.26e-01 | 87.2% | 92.4% |
| 3475163 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.52 | 40.0 | 3.48e-01 | 82.1% | 75.0% |
| 3722085 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.52 | 41.0 | 3.25e-01 | 89.7% | 82.8% |
| 5024225 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.52 | 37.0 | 2.65e-01 | 78.2% | 74.5% |
| 1030446 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.52 | 31.0 | 3.39e-01 | 100.0% | 71.9% |
| 4426542 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.51 | 39.0 | 3.32e-01 | 84.6% | 93.6% |
| 4942752 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.51 | 38.0 | 3.47e-01 | 83.3% | 100.0% |
| 5075853 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.51 | 39.0 | 3.13e-01 | 87.2% | 86.9% |
| 3946119 | 2498.2.1.8 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › PF29164 | 0.50 | 41.0 | 3.42e-01 | 92.3% | 86.9% |