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IMGVR_UViG_2554235497_000003-2554235497-2556172821

Arc-Vir

IMGVR_UViG_2554235497_000003-2554235497-2556172821

Identity

Kingdom:
archaea

Quality

63.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-177
PDB
D2 high residues 184-266
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4uobA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.67 56.0 4.97e-01 100.0% 61.9%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 48.0 5.10e-01 98.8% 97.1%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 50.0 5.25e-01 85.5% 100.0%
1c5aA00 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.61 43.0 4.70e-01 85.5% 93.8%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 42.0 4.02e-01 100.0% 62.0%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.57 37.0 3.66e-01 74.7% 60.0%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.57 44.0 4.31e-01 84.3% 78.3%
1zkrB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.57 47.0 3.99e-01 94.0% 84.1%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.55 39.0 3.30e-01 100.0% 43.0%
3oqiA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.55 45.0 3.26e-01 97.6% 32.4%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 43.0 3.99e-01 91.6% 87.3%
4ihuA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 46.0 3.56e-01 98.8% 61.7%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 37.0 3.57e-01 98.8% 62.8%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 37.0 3.44e-01 71.1% 77.1%
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.53 44.0 4.17e-01 98.8% 84.8%
2r6aC01 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.52 39.0 3.78e-01 96.4% 71.9%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 46.0 3.79e-01 98.8% 85.2%
1a7mA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 43.0 3.38e-01 91.6% 57.2%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 45.0 4.00e-01 100.0% 90.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055562 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 75.0 7.30e-01 100.0% 93.3%
5078789 4333.1.1.8 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › N6_Mtase 0.61 47.0 2.85e-01 83.1% 49.7%
3350474 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.58 48.0 4.11e-01 100.0% 54.1%
5060704 371.1.1.5 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › DUF1353 0.58 47.0 4.31e-01 90.4% 68.2%
3567070 5000.3.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.57 45.0 3.47e-01 88.0% 73.2%
3340118 4110.1.1.1 ↗ alpha arrays › UraD-like › UraD-like › UraD-like › OHCU_decarbox 0.57 50.0 4.04e-01 98.8% 98.2%
3589737 604.27.1.0 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac 0.56 34.0 3.73e-01 92.8% 75.4%
4034350 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.56 46.0 4.30e-01 100.0% 79.1%
3498294 148.1.3.40 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid 0.55 36.0 3.43e-01 73.5% 54.3%
3831168 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 44.0 3.78e-01 91.6% 92.9%
3576964 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.54 46.0 4.23e-01 98.8% 94.8%
3585085 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.54 37.0 2.97e-01 71.1% 47.4%
138576 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.53 44.0 4.20e-01 98.8% 87.3%
3925346 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.53 45.0 3.13e-01 98.8% 32.5%
3231862 601.1.2.104 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DUF19 0.51 42.0 3.20e-01 90.4% 52.0%
4981576 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.51 40.0 3.96e-01 89.2% 87.8%
3708 601.1.2.6 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.51 45.0 3.97e-01 100.0% 88.0%
3304563 150.1.1.164 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MENTAL 0.51 44.0 3.57e-01 100.0% 85.3%
5053774 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.50 41.0 3.66e-01 96.4% 76.9%