←Back to structures
IMGVR_UViG_2554235504_000004-2554235504-2556200029
Arc-VirIMGVR_UViG_2554235504_000004-2554235504-2556200029
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-63
D2
high
residues 72-171
Domain cluster:
rep: IMGVR_UViG_2671180170_000001-2671180170-2671761746__D64-191
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 45.0 | 4.22e-01 | 86.0% | 54.8% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.65 | 51.0 | 4.90e-01 | 100.0% | 75.2% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.63 | 50.0 | 4.40e-01 | 84.0% | 60.4% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 48.0 | 4.20e-01 | 88.0% | 65.6% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 53.0 | 4.47e-01 | 100.0% | 80.8% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 40.0 | 3.85e-01 | 71.0% | 99.1% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 52.0 | 4.39e-01 | 100.0% | 88.5% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 52.0 | 4.58e-01 | 100.0% | 91.8% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 39.0 | 3.60e-01 | 71.0% | 90.1% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 42.0 | 4.09e-01 | 79.0% | 95.4% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.67e-01 | 71.0% | 95.8% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 38.0 | 3.29e-01 | 73.0% | 43.9% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 49.0 | 4.28e-01 | 99.0% | 94.3% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.55 | 46.0 | 3.80e-01 | 95.0% | 95.8% |
| 2x6hA02 | 3.30.1010.10 | Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 | 0.54 | 39.0 | 3.42e-01 | 76.0% | 75.8% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 46.0 | 4.29e-01 | 96.0% | 79.7% |
| 3eyrA00 | 3.15.10.40 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 | 0.54 | 45.0 | 3.88e-01 | 95.0% | 75.1% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 37.0 | 3.66e-01 | 72.0% | 100.0% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 43.0 | 3.67e-01 | 92.0% | 68.1% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 46.0 | 3.03e-01 | 100.0% | 76.2% |
| 1s1dA00 | 2.120.10.100 | Mainly Beta › 6 Propeller › Neuraminidase › Apyrase | 0.53 | 46.0 | 3.28e-01 | 98.0% | 90.9% |
| 1ye9A02 | 2.40.470.10 | Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain | 0.53 | 38.0 | 3.74e-01 | 77.0% | 84.8% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 43.0 | 3.91e-01 | 91.0% | 95.7% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.52 | 40.0 | 3.58e-01 | 81.0% | 59.3% |
| 3g8zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.49e-01 | 75.0% | 85.9% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.86e-01 | 98.0% | 92.0% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 40.0 | 3.08e-01 | 86.0% | 92.1% |
| 1k1yB02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 45.0 | 3.32e-01 | 97.0% | 83.7% |
| 2wzoA01 | 3.30.160.360 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 40.0 | 3.65e-01 | 85.0% | 78.9% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 38.0 | 3.52e-01 | 83.0% | 64.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027513 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.69 | 54.0 | 5.20e-01 | 100.0% | 72.2% |
| 3399403 | 206.1.1.88 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 | 0.66 | 46.0 | 2.97e-01 | 72.0% | 30.3% |
| 3710638 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.65 | 52.0 | 4.31e-01 | 86.0% | 56.0% |
| 3271615 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 53.0 | 3.43e-01 | 89.0% | 73.2% |
| 3962319 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.63 | 51.0 | 4.43e-01 | 86.0% | 69.3% |
| 3709835 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 48.0 | 4.20e-01 | 86.0% | 57.2% |
| 3599419 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.60 | 50.0 | 4.77e-01 | 97.0% | 78.3% |
| 3169357 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 52.0 | 5.11e-01 | 100.0% | 87.3% |
| 3303879 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.59 | 52.0 | 4.00e-01 | 100.0% | 89.6% |
| 3506373 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.58 | 42.0 | 3.83e-01 | 75.0% | 86.7% |
| 3441723 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.58 | 44.0 | 3.15e-01 | 80.0% | 52.3% |
| 3687101 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 49.0 | 3.52e-01 | 95.0% | 98.3% |
| 3933857 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.57 | 39.0 | 3.09e-01 | 71.0% | 33.3% |
| 3955856 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.57 | 41.0 | 3.81e-01 | 75.0% | 83.1% |
| 3428522 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.57 | 50.0 | 3.84e-01 | 100.0% | 90.8% |
| 4937710 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 39.0 | 3.81e-01 | 73.0% | 92.2% |
| 4978000 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.56 | 39.0 | 3.63e-01 | 72.0% | 85.3% |
| 3526118 | 11.1.1.810 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FGF-BP1 | 0.56 | 41.0 | 4.06e-01 | 77.0% | 97.1% |
| 3271023 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.56 | 48.0 | 4.04e-01 | 96.0% | 95.3% |
| 4016644 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.56 | 47.0 | 4.10e-01 | 92.0% | 87.2% |
| 5047469 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.55 | 49.0 | 4.54e-01 | 100.0% | 81.5% |
| 3815369 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.55 | 45.0 | 3.69e-01 | 93.0% | 81.5% |
| 3967804 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 39.0 | 3.90e-01 | 75.0% | 89.5% |
| 4015614 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 46.0 | 4.27e-01 | 96.0% | 83.1% |
| 3426677 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.53 | 38.0 | 3.92e-01 | 84.0% | 78.7% |
| 4613375 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 41.0 | 3.29e-01 | 84.0% | 74.1% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.53 | 40.0 | 4.23e-01 | 80.0% | 92.2% |
| 5056130 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.53 | 38.0 | 3.91e-01 | 76.0% | 93.7% |
| 3495405 | 3131.1.1.1 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC | 0.52 | 42.0 | 3.67e-01 | 86.0% | 77.3% |
| 5024241 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.52 | 40.0 | 4.18e-01 | 82.0% | 91.6% |
| 4937410 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.52 | 40.0 | 4.14e-01 | 82.0% | 87.4% |
| 3517323 | 3131.1.1.2 ↗ | a+b two layers › FYR domain › FYR domain › FYR domain › FYRN | 0.52 | 41.0 | 4.00e-01 | 86.0% | 96.4% |
| 3969155 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.52 | 44.0 | 3.79e-01 | 93.0% | 83.2% |
| 3990705 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 44.0 | 3.72e-01 | 99.0% | 81.7% |
| 3631147 | 247.1.1.10 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › DRMBL,Lactamase_B_2 | 0.51 | 37.0 | 2.71e-01 | 75.0% | 45.0% |
| 3835666 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.51 | 34.0 | 2.53e-01 | 70.0% | 51.0% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.51 | 41.0 | 4.19e-01 | 90.0% | 89.0% |