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IMGVR_UViG_2554235504_000004-2554235504-2556200035
Arc-VirIMGVR_UViG_2554235504_000004-2554235504-2556200035
Identity
- Kingdom:
- archaea
Quality
59.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-67
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cdwA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.61 | 43.0 | 3.57e-01 | 80.0% | 51.2% |
| 1xtfA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.57 | 44.0 | 2.57e-01 | 95.0% | 40.7% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 38.0 | 3.19e-01 | 70.0% | 85.0% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 41.0 | 3.53e-01 | 82.5% | 83.8% |
| 3jq0A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 42.0 | 2.40e-01 | 85.0% | 14.9% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 38.0 | 3.22e-01 | 72.5% | 64.8% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 39.0 | 2.69e-01 | 80.0% | 61.0% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 42.0 | 3.59e-01 | 82.5% | 69.1% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 41.0 | 2.64e-01 | 100.0% | 41.1% |
| 6cmzA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 40.0 | 3.04e-01 | 85.0% | 82.4% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 40.0 | 3.47e-01 | 82.5% | 69.7% |
| 3pnnA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 37.0 | 2.30e-01 | 77.5% | 17.6% |
| 2hqmA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 37.0 | 2.45e-01 | 80.0% | 58.8% |
| 2mamA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 2.65e-01 | 72.5% | 96.6% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 3.07e-01 | 82.5% | 41.3% |
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 34.0 | 3.09e-01 | 70.0% | 78.8% |
| 1wgeA00 | 3.10.660.10 | Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger | 0.52 | 38.0 | 3.23e-01 | 90.0% | 45.8% |
| 1r9cA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 37.0 | 2.77e-01 | 85.0% | 28.8% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.52 | 37.0 | 2.82e-01 | 82.5% | 50.9% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.27e-01 | 77.5% | 86.4% |
| 1i82A00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 2.64e-01 | 95.0% | 81.0% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 36.0 | 3.51e-01 | 85.0% | 80.0% |
| 3vcaA02 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 38.0 | 2.94e-01 | 95.0% | 42.9% |
| 2l6lA02 | 3.10.660.10 | Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger | 0.50 | 36.0 | 3.32e-01 | 90.0% | 58.5% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3594393 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.66 | 47.0 | 3.88e-01 | 80.0% | 57.5% |
| 3466109 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.66 | 44.0 | 2.62e-01 | 70.0% | 39.8% |
| 4112414 | 2004.1.1.301 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 | 0.65 | 50.0 | 2.95e-01 | 85.0% | 39.4% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.65 | 51.0 | 2.96e-01 | 87.5% | 9.4% |
| 3702974 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.64 | 44.0 | 4.10e-01 | 75.0% | 83.3% |
| 4002724 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.64 | 49.0 | 2.85e-01 | 85.0% | 32.4% |
| 5041236 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.61 | 43.0 | 4.00e-01 | 70.0% | 61.8% |
| 3665681 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.60 | 45.0 | 2.55e-01 | 82.5% | 7.7% |
| 3416070 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 48.0 | 2.88e-01 | 97.5% | 34.1% |
| 3459959 | 192.8.1.454 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Kinesin | 0.60 | 47.0 | 2.75e-01 | 92.5% | 80.5% |
| 4203006 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.59 | 45.0 | 3.37e-01 | 85.0% | 94.5% |
| 3176914 | 3519.1.1.1 ↗ | beta complex topology › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Myoferlin inner DysF domain › Pex24p | 0.59 | 41.0 | 3.11e-01 | 82.5% | 27.5% |
| 3652079 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 42.0 | 3.26e-01 | 90.0% | 91.3% |
| 4985368 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.57 | 42.0 | 3.88e-01 | 90.0% | 76.7% |
| 3266623 | 4281.1.1.0 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p | 0.57 | 41.0 | 4.11e-01 | 85.0% | 80.0% |
| 3902395 | 4138.1.1.1 ↗ | few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat › Granulin | 0.56 | 40.0 | 3.49e-01 | 85.0% | 56.0% |
| 4027091 | 375.3.1.2 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL | 0.56 | 38.0 | 3.57e-01 | 70.0% | 49.1% |
| 4079885 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.56 | 43.0 | 3.31e-01 | 82.5% | 42.1% |
| None | — | 0.56 | 38.0 | 2.28e-01 | 72.5% | 32.0% | |
| 3242411 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.56 | 40.0 | 3.07e-01 | 80.0% | 77.3% |
| 3884178 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.56 | 42.0 | 3.54e-01 | 85.0% | 70.7% |
| 3473109 | 220.1.1.247 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_34 | 0.55 | 39.0 | 3.48e-01 | 77.5% | 95.0% |
| 3700076 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.55 | 41.0 | 2.35e-01 | 80.0% | 12.8% |
| 3595133 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 44.0 | 2.69e-01 | 100.0% | 24.3% |
| 3217960 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.53 | 40.0 | 3.09e-01 | 85.0% | 87.6% |
| 4302391 | 4.1.1.398 ↗ | beta barrels › SH3 › SH3 › SH3 › YolD | 0.53 | 40.0 | 3.55e-01 | 82.5% | 87.7% |
| 3919870 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.53 | 37.0 | 2.89e-01 | 85.0% | 57.5% |
| 5050463 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.53 | 35.0 | 3.19e-01 | 72.5% | 45.0% |
| 3930660 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.52 | 38.0 | 3.01e-01 | 85.0% | 87.8% |
| 3991453 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 37.0 | 2.55e-01 | 100.0% | 73.9% |
| 5015352 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 36.0 | 2.96e-01 | 72.5% | 56.6% |
| 4245376 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.51 | 35.0 | 3.18e-01 | 72.5% | 95.0% |
| 3945545 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.51 | 36.0 | 3.35e-01 | 87.5% | 64.6% |
| 3361063 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.51 | 39.0 | 2.51e-01 | 100.0% | 33.5% |
| 3991186 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.51 | 35.0 | 2.80e-01 | 87.5% | 63.5% |
| 3403184 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.50 | 38.0 | 3.03e-01 | 85.0% | 82.0% |
| 3403990 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.50 | 37.0 | 2.92e-01 | 85.0% | 64.1% |
| 4325818 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.50 | 35.0 | 2.18e-01 | 82.5% | 10.4% |