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IMGVR_UViG_2554235504_000004-2554235504-2556200050
Arc-VirIMGVR_UViG_2554235504_000004-2554235504-2556200050
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 89-198
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.77 | 48.0 | 5.82e-01 | 75.5% | 97.2% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.75 | 44.0 | 4.75e-01 | 73.6% | 67.4% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.75 | 44.0 | 4.88e-01 | 72.7% | 72.7% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.74 | 46.0 | 5.65e-01 | 73.6% | 100.0% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.74 | 43.0 | 4.73e-01 | 73.6% | 71.1% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.71 | 42.0 | 4.27e-01 | 72.7% | 59.8% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 41.0 | 3.95e-01 | 70.9% | 50.8% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.70 | 44.0 | 4.78e-01 | 84.5% | 75.8% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.64 | 42.0 | 3.26e-01 | 70.9% | 30.4% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 36.0 | 3.39e-01 | 70.0% | 44.9% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.63 | 38.0 | 4.28e-01 | 73.6% | 77.9% |
| 1ex2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.62 | 45.0 | 3.76e-01 | 74.5% | 90.3% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 40.0 | 4.15e-01 | 90.9% | 72.3% |
| 1u14A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.60 | 43.0 | 3.76e-01 | 74.5% | 87.6% |
| 4u13A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 37.0 | 3.73e-01 | 72.7% | 64.2% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.57 | 50.0 | 4.63e-01 | 96.4% | 93.4% |
| 1vl4A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.56 | 38.0 | 3.13e-01 | 74.5% | 37.6% |
| 3rqbA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.54 | 38.0 | 2.96e-01 | 74.5% | 98.5% |
| 3uoaB02 | 2.60.40.3360 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 37.0 | 3.43e-01 | 70.9% | 91.9% |
| 4n4bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 32.0 | 2.35e-01 | 72.7% | 20.4% |
| 1na8B00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.53 | 36.0 | 3.32e-01 | 70.9% | 72.4% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.66e-01 | 78.2% | 67.5% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 45.0 | 3.37e-01 | 94.5% | 62.4% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3420092 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.84 | 52.0 | 6.05e-01 | 86.4% | 86.3% |
| 4941364 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.76 | 46.0 | 4.74e-01 | 74.5% | 63.8% |
| 3435911 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.75 | 51.0 | 5.11e-01 | 82.7% | 69.1% |
| 3506561 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.74 | 48.0 | 5.68e-01 | 88.2% | 96.0% |
| 3502941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.74 | 48.0 | 5.72e-01 | 86.4% | 96.0% |
| 3789856 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.74 | 58.0 | 5.78e-01 | 99.1% | 79.1% |
| 3972879 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.74 | 43.0 | 4.56e-01 | 73.6% | 64.0% |
| 429988 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.74 | 43.0 | 4.69e-01 | 73.6% | 68.8% |
| 3825504 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.72 | 49.0 | 5.36e-01 | 88.2% | 84.4% |
| 3816855 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 63.0 | 6.06e-01 | 94.5% | 83.2% |
| 5061259 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.71 | 46.0 | 4.84e-01 | 74.5% | 72.0% |
| 4968392 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.71 | 46.0 | 4.82e-01 | 74.5% | 72.0% |
| 4982298 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.71 | 47.0 | 4.73e-01 | 74.5% | 67.9% |
| 5029238 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.70 | 46.0 | 4.85e-01 | 73.6% | 73.0% |
| 5024241 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.70 | 45.0 | 4.87e-01 | 73.6% | 75.8% |
| 5069695 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.69 | 45.0 | 4.56e-01 | 74.5% | 66.1% |
| 5080980 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.69 | 45.0 | 4.50e-01 | 74.5% | 65.5% |
| 3435374 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.69 | 47.0 | 5.27e-01 | 80.9% | 90.6% |
| 4937410 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.69 | 44.0 | 4.72e-01 | 74.5% | 74.7% |
| 3481273 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 50.0 | 5.13e-01 | 93.6% | 80.0% |
| 5058021 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.67 | 44.0 | 4.55e-01 | 73.6% | 70.5% |
| 4872853 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.67 | 41.0 | 4.27e-01 | 73.6% | 65.7% |
| 3629963 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.67 | 52.0 | 5.43e-01 | 94.5% | 89.9% |
| 5073568 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.66 | 36.0 | 2.91e-01 | 73.6% | 27.8% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.66 | 40.0 | 4.78e-01 | 73.6% | 92.9% |
| 5056130 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.66 | 44.0 | 4.68e-01 | 73.6% | 78.9% |
| 3267746 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.64 | 41.0 | 4.58e-01 | 73.6% | 83.5% |
| 5076771 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.64 | 45.0 | 4.57e-01 | 72.7% | 80.0% |
| 4058654 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.64 | 41.0 | 4.27e-01 | 73.6% | 70.7% |
| 3194095 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.63 | 42.0 | 4.44e-01 | 74.5% | 77.9% |
| 3797649 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 50.0 | 5.00e-01 | 96.4% | 83.6% |
| 3164722 | 512.1.1.3 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st, PmbA_TldD_2nd | 0.62 | 42.0 | 3.23e-01 | 70.0% | 38.3% |
| 3513352 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.62 | 44.0 | 4.40e-01 | 74.5% | 80.0% |
| 3735671 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.61 | 41.0 | 4.34e-01 | 74.5% | 76.0% |
| 3282536 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.61 | 40.0 | 4.61e-01 | 73.6% | 92.5% |
| 5077736 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.60 | 43.0 | 3.38e-01 | 73.6% | 40.9% |
| 3596829 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 44.0 | 4.39e-01 | 88.2% | 73.9% |
| 3960716 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.59 | 40.0 | 3.99e-01 | 73.6% | 66.1% |
| 4979864 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.59 | 42.0 | 3.92e-01 | 73.6% | 64.4% |
| 4004011 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 49.0 | 4.94e-01 | 96.4% | 90.0% |
| 5082214 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.59 | 42.0 | 4.29e-01 | 74.5% | 77.1% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.59 | 42.0 | 4.44e-01 | 74.5% | 84.0% |
| 4994512 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.58 | 41.0 | 3.38e-01 | 72.7% | 44.1% |
| 3453094 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.58 | 47.0 | 3.88e-01 | 88.2% | 79.0% |
| 5000963 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.58 | 39.0 | 3.11e-01 | 70.0% | 39.6% |
| 5007696 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.57 | 40.0 | 4.07e-01 | 74.5% | 74.3% |
| 4944354 | 512.1.1.5 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd | 0.57 | 41.0 | 3.18e-01 | 73.6% | 39.1% |
| 3700773 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.57 | 47.0 | 3.97e-01 | 88.2% | 86.7% |
| 5043104 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.57 | 40.0 | 3.81e-01 | 73.6% | 70.4% |
| 3332798 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.52 | 41.0 | 3.53e-01 | 84.5% | 95.4% |
| 4971335 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.52 | 37.0 | 2.90e-01 | 73.6% | 35.7% |
| 3784232 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 41.0 | 3.82e-01 | 88.2% | 95.2% |
| 3968678 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.51 | 46.0 | 4.26e-01 | 98.2% | 95.7% |
| 5037441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 39.0 | 3.94e-01 | 83.6% | 91.8% |