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IMGVR_UViG_2554235504_000004-2554235504-2556200060

Arc-Vir

IMGVR_UViG_2554235504_000004-2554235504-2556200060

Identity

Kingdom:
archaea

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-93
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.66 51.0 3.40e-01 80.7% 96.8%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 51.0 3.79e-01 81.9% 44.0%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 40.0 3.53e-01 78.3% 43.7%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 45.0 3.57e-01 71.1% 100.0%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 39.0 3.32e-01 77.1% 38.9%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.65 49.0 3.86e-01 81.9% 62.7%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 50.0 3.73e-01 88.0% 88.1%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 42.0 3.81e-01 71.1% 94.8%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 46.0 4.54e-01 81.9% 76.1%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 42.0 2.84e-01 71.1% 79.1%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 39.0 3.35e-01 81.9% 42.2%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.64e-01 84.3% 54.5%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 41.0 3.37e-01 72.3% 44.2%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 4.23e-01 80.7% 94.9%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 48.0 3.85e-01 94.0% 92.2%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.58 43.0 3.91e-01 78.3% 100.0%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.35e-01 83.1% 59.8%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.53e-01 84.3% 57.6%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.49e-01 84.3% 60.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.57 42.0 3.41e-01 80.7% 97.7%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.33e-01 83.1% 60.0%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 48.0 3.91e-01 97.6% 94.5%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.56 43.0 3.90e-01 85.5% 97.5%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.65e-01 74.7% 87.9%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 40.0 2.88e-01 77.1% 74.9%
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 45.0 3.10e-01 89.2% 28.3%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 41.0 3.99e-01 81.9% 98.9%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 3.30e-01 84.3% 63.3%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 37.0 2.91e-01 75.9% 86.1%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.96e-01 88.0% 83.1%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 43.0 2.88e-01 94.0% 43.3%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.50 38.0 3.57e-01 90.4% 63.9%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 40.0 3.91e-01 100.0% 76.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.90e-01 75.9% 100.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4500973 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.68 39.0 3.41e-01 75.9% 39.0%
4379629 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.66 41.0 3.56e-01 78.3% 43.3%
3515736 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 49.0 3.43e-01 78.3% 33.3%
4437554 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.65 40.0 3.46e-01 77.1% 41.6%
3939467 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.64 48.0 4.27e-01 79.5% 59.3%
3715021 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 44.0 3.36e-01 72.3% 45.9%
3969424 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 44.0 2.87e-01 72.3% 96.7%
4627488 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.63 45.0 2.91e-01 75.9% 87.6%
4017127 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 46.0 3.17e-01 77.1% 96.4%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.62 44.0 4.79e-01 83.1% 93.8%
3582979 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.62 47.0 2.97e-01 79.5% 83.4%
4937428 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.62 46.0 3.84e-01 78.3% 44.8%
3782385 5.1.4.78 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta 0.62 45.0 2.84e-01 77.1% 95.8%
4978331 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.62 36.0 3.90e-01 89.2% 68.6%
4927832 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 43.0 3.92e-01 72.3% 92.7%
3731204 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 48.0 3.09e-01 84.3% 98.5%
3866143 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.61 43.0 3.00e-01 74.7% 96.0%
1100 10.1.1.32 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser 0.60 48.0 3.59e-01 84.3% 51.8%
3582226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 47.0 3.55e-01 85.5% 61.0%
3668331 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 43.0 2.92e-01 75.9% 90.6%
3928299 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 46.0 3.69e-01 83.1% 64.7%
3800238 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.60 46.0 3.38e-01 83.1% 55.7%
4968200 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.60 42.0 3.07e-01 73.5% 62.7%
3877056 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.59 42.0 2.86e-01 74.7% 79.9%
3586270 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 2.89e-01 81.9% 91.0%
3990496 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 38.0 4.17e-01 84.3% 80.0%
3230195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 44.0 2.90e-01 79.5% 94.8%
3743202 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.58 39.0 3.44e-01 75.9% 48.3%
4024730 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.58 39.0 3.90e-01 75.9% 67.1%
3604446 2004.1.1.480 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.58 42.0 2.53e-01 77.1% 82.5%
3216630 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.77e-01 78.3% 82.0%
3823661 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.58 42.0 2.91e-01 77.1% 99.7%
3914794 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.57 46.0 3.52e-01 89.2% 54.1%
4948086 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.63e-01 83.1% 61.3%
3981710 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.57 40.0 2.87e-01 73.5% 58.0%
4526577 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.56 41.0 2.89e-01 75.9% 95.1%
4966157 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 44.0 3.40e-01 85.5% 67.9%
3754155 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 43.0 2.78e-01 83.1% 26.7%
3917776 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 41.0 2.75e-01 75.9% 95.2%
3889733 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 42.0 3.28e-01 83.1% 56.8%
3570861 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 44.0 3.33e-01 89.2% 51.8%
4232261 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 43.0 3.47e-01 85.5% 66.7%
4028948 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 39.0 2.49e-01 74.7% 83.0%
166678 247.1.1.15 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › HAGH_C 0.55 45.0 3.10e-01 89.2% 28.3%
4289134 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.54 41.0 3.38e-01 84.3% 64.3%
3309970 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 42.0 2.87e-01 88.0% 97.1%
2392831 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.53 37.0 3.20e-01 75.9% 46.5%
3993651 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.32e-01 100.0% 100.0%
3777518 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 44.0 3.24e-01 95.2% 47.3%
3805876 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 43.0 2.92e-01 90.4% 62.2%
3511321 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.52 45.0 2.70e-01 97.6% 54.5%