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IMGVR_UViG_2558860120_000001-2558860120-2558933736
Arc-VirIMGVR_UViG_2558860120_000001-2558860120-2558933736
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 100-181
Domain cluster:
rep: IMGVR_UViG_3300010271_000126-3300010271-Ga0134095_100178714__D6-67
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4itxA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 42.0 | 3.65e-01 | 87.8% | 83.9% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 35.0 | 3.79e-01 | 90.2% | 85.5% |
| 2kwaA00 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 44.0 | 4.13e-01 | 97.6% | 98.0% |
| 4oelB00 | 2.40.50.170 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C | 0.50 | 31.0 | 3.32e-01 | 91.5% | 72.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3953655 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.65 | 48.0 | 5.30e-01 | 87.8% | 96.9% |
| 4944924 | 3696.1.1.6 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › ResIII | 0.60 | 43.0 | 4.58e-01 | 97.6% | 91.4% |
| 5014579 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.58 | 49.0 | 5.09e-01 | 100.0% | 100.0% |
| 3946211 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.57 | 47.0 | 4.80e-01 | 97.6% | 92.5% |
| 3716774 | 306.5.1.2 ↗ | a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP › PF28980 | 0.52 | 44.0 | 4.01e-01 | 97.6% | 94.8% |
| 3632939 | 101.1.9.80 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YOL029C_N | 0.52 | 40.0 | 3.83e-01 | 87.8% | 93.0% |
| 3703566 | 306.10.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 | 0.51 | 44.0 | 3.97e-01 | 100.0% | 94.2% |
| 3590655 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.50 | 40.0 | 3.70e-01 | 89.0% | 89.1% |
D2
high
residues 208-296
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.64 | 47.0 | 4.13e-01 | 76.4% | 64.1% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.64 | 47.0 | 4.15e-01 | 77.5% | 65.9% |
| 1cdwA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.61 | 37.0 | 3.81e-01 | 78.7% | 64.0% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 45.0 | 3.82e-01 | 85.4% | 72.0% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 45.0 | 3.17e-01 | 84.3% | 91.8% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 45.0 | 3.22e-01 | 87.6% | 68.7% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 44.0 | 3.15e-01 | 85.4% | 91.1% |
| 2wkkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.64e-01 | 84.3% | 69.3% |
| 2r0hA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 3.62e-01 | 86.5% | 68.8% |
| 1qnaA01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 38.0 | 3.78e-01 | 82.0% | 68.8% |
| 3zxfA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.70e-01 | 84.3% | 76.3% |
| 3zhaQ02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 39.0 | 3.47e-01 | 76.4% | 70.2% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 45.0 | 3.07e-01 | 93.3% | 37.7% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 38.0 | 2.78e-01 | 74.2% | 93.3% |
| 3cwzB03 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.53 | 37.0 | 3.38e-01 | 73.0% | 95.9% |
| 1dbzA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 43.0 | 3.42e-01 | 88.8% | 58.2% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.53 | 39.0 | 4.09e-01 | 93.3% | 85.0% |
| 1ud9A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 42.0 | 3.07e-01 | 85.4% | 92.1% |
| 3nreA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 42.0 | 3.05e-01 | 89.9% | 74.9% |
| 7jl1B01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.52 | 41.0 | 3.41e-01 | 83.1% | 74.2% |
| 3kb5A00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.52 | 43.0 | 3.32e-01 | 88.8% | 98.4% |
| 1dhkB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.15e-01 | 83.1% | 67.2% |
| 4c8bA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 44.0 | 3.14e-01 | 94.4% | 56.3% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 41.0 | 2.99e-01 | 85.4% | 92.2% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 39.0 | 3.27e-01 | 83.1% | 59.8% |
| 3tixB01 | 2.40.290.20 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.51 | 44.0 | 3.80e-01 | 97.8% | 58.8% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 38.0 | 3.41e-01 | 79.8% | 100.0% |
| 1qwyA02 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.51 | 42.0 | 3.41e-01 | 89.9% | 83.7% |
| 4ae7A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 3.09e-01 | 82.0% | 87.1% |
| 5b0hA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.51 | 39.0 | 3.43e-01 | 82.0% | 68.4% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 36.0 | 2.66e-01 | 74.2% | 92.2% |
| 3esiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 36.0 | 3.21e-01 | 73.0% | 86.3% |
| 6nqiA01 | 3.30.420.230 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Prp8 RNase H domain, palm region | 0.51 | 35.0 | 3.02e-01 | 71.9% | 95.0% |
| 2cayB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 45.0 | 3.99e-01 | 100.0% | 88.5% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3802536 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.61 | 48.0 | 3.85e-01 | 83.1% | 61.8% |
| 5043062 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.61 | 38.0 | 4.31e-01 | 80.9% | 82.6% |
| 3544235 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.61 | 38.0 | 3.84e-01 | 80.9% | 63.3% |
| 4998500 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.60 | 38.0 | 3.60e-01 | 82.0% | 55.2% |
| 5081191 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.60 | 38.0 | 3.81e-01 | 80.9% | 63.3% |
| 5027198 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.60 | 38.0 | 3.50e-01 | 80.9% | 51.8% |
| 3510576 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.59 | 38.0 | 3.99e-01 | 80.9% | 72.5% |
| 5061905 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.59 | 38.0 | 4.06e-01 | 80.9% | 73.8% |
| 3481359 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 4.19e-01 | 78.7% | 95.0% |
| 5051705 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.58 | 38.0 | 3.70e-01 | 80.9% | 62.1% |
| 4992522 | 4312.1.1.15 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 | 0.58 | 42.0 | 4.49e-01 | 84.3% | 88.5% |
| 5038129 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.57 | 37.0 | 3.83e-01 | 84.3% | 69.9% |
| 2066797 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.57 | 48.0 | 3.82e-01 | 93.3% | 89.9% |
| 4043935 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.56 | 41.0 | 3.63e-01 | 76.4% | 97.7% |
| 3284501 | 11.1.3.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › RskA_C | 0.56 | 44.0 | 4.21e-01 | 83.1% | 100.0% |
| 3514255 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.56 | 47.0 | 4.09e-01 | 94.4% | 82.9% |
| 3245194 | 5.1.3.152 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N | 0.55 | 46.0 | 3.01e-01 | 92.1% | 51.5% |
| 3783625 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 2.98e-01 | 88.8% | 31.1% |
| 3247601 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.55 | 42.0 | 2.85e-01 | 83.1% | 35.9% |
| 5037699 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.54 | 37.0 | 3.65e-01 | 71.9% | 100.0% |
| 3536769 | 5.1.4.57 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PALB2_WD40 | 0.54 | 44.0 | 2.89e-01 | 87.6% | 40.5% |
| 3219132 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.54 | 42.0 | 3.52e-01 | 84.3% | 71.6% |
| 3384583 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.53 | 44.0 | 2.88e-01 | 91.0% | 21.7% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.53 | 39.0 | 4.13e-01 | 93.3% | 87.2% |
| 3709124 | 5.1.5.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N | 0.53 | 42.0 | 2.67e-01 | 87.6% | 61.1% |
| 3843818 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.53 | 41.0 | 3.25e-01 | 84.3% | 67.0% |
| 3594086 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.52 | 40.0 | 2.97e-01 | 85.4% | 70.4% |
| 2082647 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.52 | 44.0 | 3.23e-01 | 94.4% | 60.7% |
| 358183 | 4059.1.1.0 ↗ | a+b complex topology › Serpins › Serpins › Serpins | 0.52 | 42.0 | 2.83e-01 | 89.9% | 97.0% |
| 3910127 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.52 | 40.0 | 3.21e-01 | 83.1% | 68.6% |
| 3804985 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.52 | 40.0 | 3.87e-01 | 83.1% | 85.0% |
| 5046652 | 3784.1.1.0 ↗ | a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related | 0.51 | 44.0 | 3.55e-01 | 100.0% | 48.1% |
| 4319226 | 220.1.1.313 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF27495 | 0.51 | 43.0 | 3.72e-01 | 93.3% | 90.7% |
| 4334199 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.50 | 38.0 | 3.39e-01 | 79.8% | 56.8% |
| 4023994 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.50 | 40.0 | 3.74e-01 | 85.4% | 70.0% |
D3
medium
residues 1-99