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IMGVR_UViG_2585428003_000001-2585428003-2587533803

Arc-Vir

IMGVR_UViG_2585428003_000001-2585428003-2587533803

Identity

Kingdom:
archaea

Quality

55.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hzeA00 3.30.70.1860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein family Ycf54 0.69 49.0 4.04e-01 73.8% 89.7%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.64 43.0 3.08e-01 70.5% 35.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.70e-01 73.8% 56.0%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 44.0 3.56e-01 73.8% 51.7%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 43.0 3.75e-01 72.1% 53.7%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 3.59e-01 70.5% 43.4%
5uv6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 3.58e-01 70.5% 47.6%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 3.79e-01 72.1% 66.7%
3hz6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 41.0 2.78e-01 70.5% 66.4%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 3.51e-01 70.5% 55.8%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 41.0 3.54e-01 70.5% 46.5%
2w4lB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 46.0 3.41e-01 80.3% 81.5%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 41.0 3.49e-01 70.5% 54.5%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 41.0 3.00e-01 72.1% 29.8%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 40.0 3.09e-01 70.5% 45.4%
3gf8A01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 3.23e-01 78.7% 46.2%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.59 39.0 3.98e-01 73.8% 71.2%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.57e-01 75.4% 62.5%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.57e-01 72.1% 53.5%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.13e-01 73.8% 98.3%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.56 39.0 3.32e-01 75.4% 50.9%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 37.0 3.10e-01 70.5% 97.1%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.55 36.0 3.77e-01 72.1% 73.7%
4d7sA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 3.09e-01 77.0% 55.4%
2wp4B00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.53 40.0 3.14e-01 80.3% 100.0%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 36.0 2.82e-01 72.1% 88.5%
4lrzE01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 35.0 2.49e-01 70.5% 53.4%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.20e-01 95.1% 69.4%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.21e-01 95.1% 47.1%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 2.80e-01 70.5% 87.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065490 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.72 48.0 3.85e-01 70.5% 97.6%
3177414 4076.1.1.2 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.69 47.0 5.05e-01 72.1% 86.0%
3486057 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 50.0 5.04e-01 96.7% 81.7%
3465504 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.67 44.0 4.69e-01 72.1% 84.0%
3972612 308.1.1.0 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.65 56.0 4.83e-01 96.7% 94.7%
3216595 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 49.0 4.42e-01 86.9% 93.3%
4968164 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 43.0 2.80e-01 70.5% 16.2%
166590 11.1.1.184 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.63 43.0 3.15e-01 72.1% 40.7%
4236239 11.1.1.1199 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30703 0.63 42.0 3.96e-01 70.5% 64.0%
4970439 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.62 42.0 3.68e-01 70.5% 47.8%
4968789 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 41.0 3.47e-01 70.5% 41.0%
5078458 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.61 52.0 3.59e-01 100.0% 46.2%
5018123 5.1.4.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YNCE 0.60 40.0 2.44e-01 70.5% 10.8%
3534502 109.4.1.1310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.59 45.0 2.59e-01 98.4% 7.0%
4457666 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.58 40.0 3.71e-01 72.1% 81.2%
5068794 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.58 40.0 3.48e-01 72.1% 47.4%
5013999 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 39.0 2.91e-01 70.5% 47.9%
3492395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 33.0 2.97e-01 75.4% 36.7%
4026797 221.1.1.31 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › NLE 0.57 39.0 3.45e-01 70.5% 84.4%
4964937 821.1.1.15 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.56 38.0 3.74e-01 72.1% 72.9%
3467232 4076.1.1.0 ↗ a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.54 43.0 4.22e-01 91.8% 100.0%
5039826 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 34.0 2.75e-01 70.5% 84.3%
3489018 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.50 38.0 3.04e-01 90.2% 46.0%
D2 medium residues 137-236
PDB