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IMGVR_UViG_2600255154_000001-2600255154-2601102914

Arc-Vir

IMGVR_UViG_2600255154_000001-2600255154-2601102914

Identity

Kingdom:
archaea

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-103
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.77 53.0 4.03e-01 70.8% 74.3%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.74 51.0 4.98e-01 70.8% 72.1%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.73 46.0 4.84e-01 90.6% 70.1%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 42.0 4.71e-01 75.0% 74.7%
7zdtD01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.71 56.0 3.82e-01 83.3% 39.0%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.71 53.0 4.60e-01 79.2% 59.2%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.70 64.0 4.61e-01 100.0% 58.6%
1twcA01 4.10.860.120 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › RNA polymerase II, clamp domain 0.70 49.0 4.38e-01 72.9% 74.2%
3lk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.70 62.0 4.28e-01 100.0% 39.3%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.69 43.0 4.20e-01 92.7% 57.1%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.68 48.0 3.60e-01 71.9% 38.1%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 48.0 4.57e-01 74.0% 97.3%
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.67 56.0 4.85e-01 89.6% 84.8%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.65 43.0 4.48e-01 92.7% 73.9%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.65 49.0 3.89e-01 81.2% 73.9%
4jvsA01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 46.0 4.25e-01 75.0% 60.3%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.64 54.0 4.84e-01 88.5% 68.5%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.64 48.0 4.59e-01 79.2% 75.2%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.63 56.0 4.90e-01 94.8% 99.3%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 44.0 3.53e-01 72.9% 81.6%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.62 45.0 4.24e-01 75.0% 82.5%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 55.0 4.44e-01 93.8% 76.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.62 47.0 4.26e-01 93.8% 59.2%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 43.0 4.31e-01 83.3% 70.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 5.32e-01 93.8% 93.5%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 54.0 4.40e-01 94.8% 74.9%
1dn1B00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 53.0 3.99e-01 95.8% 80.6%
3rkoG00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 41.0 4.05e-01 83.3% 67.0%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.59 52.0 4.27e-01 93.8% 96.9%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 46.0 4.63e-01 100.0% 82.8%
4f7nB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 45.0 4.07e-01 100.0% 58.8%
8e9gK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 4.09e-01 83.3% 73.6%
1qgtB00 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.58 49.0 4.20e-01 89.6% 71.3%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.57 46.0 3.77e-01 86.5% 78.9%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 50.0 4.48e-01 94.8% 97.0%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.57 51.0 4.34e-01 93.8% 65.5%
1a7mA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 49.0 4.04e-01 95.8% 63.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.57 48.0 4.92e-01 96.9% 92.3%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.57 49.0 2.87e-01 93.8% 63.1%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 45.0 4.54e-01 91.7% 84.4%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 42.0 3.48e-01 90.6% 45.2%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 47.0 4.22e-01 94.8% 83.0%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 46.0 4.57e-01 100.0% 87.4%
5ymrC00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.54 47.0 2.71e-01 92.7% 25.6%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 43.0 4.40e-01 94.8% 88.4%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 44.0 3.85e-01 94.8% 86.5%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.52 44.0 3.60e-01 92.7% 91.7%
2qr4A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.50 43.0 3.71e-01 95.8% 85.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3326008 5086.1.1.96 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF632 0.79 58.0 5.71e-01 75.0% 82.0%
337179 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 53.0 4.03e-01 70.8% 74.3%
3832341 601.1.2.3 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › GCIP_C 0.76 58.0 4.49e-01 79.2% 84.1%
3927737 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.76 54.0 5.51e-01 74.0% 88.4%
4986745 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 52.0 4.19e-01 89.6% 40.2%
3628598 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.73 52.0 5.74e-01 88.5% 88.7%
3258025 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.71 63.0 4.53e-01 93.8% 68.4%
3584048 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 50.0 5.21e-01 87.5% 77.8%
4004067 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 49.0 5.29e-01 88.5% 81.2%
3455609 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.71 54.0 5.38e-01 90.6% 76.0%
3226018 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.70 56.0 4.00e-01 83.3% 86.5%
3693073 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 52.0 5.27e-01 100.0% 78.9%
4998672 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.69 48.0 4.96e-01 93.8% 76.7%
4387552 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.68 51.0 5.40e-01 91.7% 87.1%
3632510 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 50.0 4.93e-01 100.0% 74.0%
3484071 604.13.1.0 alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.66 44.0 3.94e-01 94.8% 50.0%
4490049 3843.1.1.6 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.66 45.0 4.66e-01 83.3% 74.4%
4944333 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.66 49.0 4.48e-01 78.1% 73.6%
3214036 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 59.0 3.92e-01 93.8% 39.7%
3974230 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 55.0 5.32e-01 87.5% 89.5%
5001524 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.65 46.0 4.70e-01 82.3% 74.7%
3637444 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.65 57.0 4.25e-01 100.0% 72.5%
3971927 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.64 44.0 4.64e-01 83.3% 79.8%
4826576 150.1.1.5 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.64 46.0 4.86e-01 85.4% 84.7%
3978522 1014.1.1.1 alpha arrays › AopB › AopB › AopB › SseC 0.64 47.0 3.73e-01 76.0% 39.5%
3603229 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.64 44.0 4.63e-01 82.3% 80.0%
4683274 3843.1.1.6 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MrpF_PhaF 0.63 43.0 4.67e-01 84.4% 85.0%
3612865 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.32e-01 90.6% 17.6%
4600409 507.1.1.0 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related 0.63 56.0 4.92e-01 93.8% 80.7%
3811507 109.4.1.1421 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_19 0.63 49.0 3.12e-01 81.2% 25.4%
3592632 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 43.0 4.36e-01 97.9% 71.6%
3649362 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 57.0 3.65e-01 94.8% 37.1%
3287731 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 55.0 4.30e-01 94.8% 60.1%
3185031 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 55.0 4.54e-01 94.8% 77.8%
4014082 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.60 55.0 5.27e-01 99.0% 100.0%
3607460 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.60 51.0 3.86e-01 90.6% 80.0%
3976441 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.60 52.0 4.71e-01 92.7% 84.8%
3248284 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.59 45.0 4.41e-01 90.6% 74.3%
3186879 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 48.0 3.87e-01 87.5% 86.7%
3924651 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 45.0 4.62e-01 91.7% 83.2%
3376249 109.4.1.1666 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 0.58 52.0 3.21e-01 93.8% 19.6%
3593555 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 54.0 4.24e-01 100.0% 60.0%
3736053 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 52.0 5.30e-01 96.9% 100.0%
3686811 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 51.0 4.12e-01 97.9% 80.6%
3631469 601.14.1.0 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.57 51.0 4.10e-01 97.9% 78.9%
4651060 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.55 49.0 4.12e-01 97.9% 81.8%
3696407 4121.1.1.7 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.55 48.0 3.58e-01 94.8% 76.6%
3727244 633.7.1.0 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.55 49.0 4.01e-01 97.9% 79.4%
3593945 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.65e-01 94.8% 53.7%
3773429 109.4.1.886 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK 0.53 48.0 3.29e-01 99.0% 41.5%
5036054 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 46.0 2.96e-01 95.8% 59.9%
3733537 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 47.0 2.89e-01 96.9% 81.8%