←Back to structures

IMGVR_UViG_2600255154_000001-2600255154-2601102921

Arc-Vir

IMGVR_UViG_2600255154_000001-2600255154-2601102921

Identity

Kingdom:
archaea

Quality

77.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-124
PDB
Domain cluster: rep: IMGVR_UViG_2684622743_000001-2684622743-2685523771__D41-153
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pbeA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 47.0 4.43e-01 83.0% 100.0%
3kezA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 47.0 3.60e-01 85.0% 80.9%
1rqlA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 34.0 2.80e-01 70.0% 34.3%
4ivnA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 40.0 3.26e-01 76.0% 82.4%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.54 40.0 3.89e-01 79.0% 100.0%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.53 43.0 2.91e-01 89.0% 78.0%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 31.0 3.57e-01 81.0% 80.6%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.51 39.0 3.86e-01 83.0% 76.4%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.50 40.0 3.62e-01 99.0% 62.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957561 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.75 58.0 5.74e-01 81.0% 88.6%
3251422 3922.1.1.207 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF3818 0.57 43.0 3.70e-01 81.0% 55.8%
4618209 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.19e-01 84.0% 61.1%
3813586 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 42.0 4.11e-01 82.0% 84.5%
3232300 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.90e-01 87.0% 92.3%
5009781 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.51 36.0 3.43e-01 96.0% 60.8%
4873837 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.51 32.0 3.39e-01 81.0% 70.1%
3250420 109.4.1.339 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRAPPC-Trs85 0.51 38.0 2.68e-01 80.0% 75.1%
3832904 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.50 38.0 2.65e-01 81.0% 33.8%
3434801 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.50 39.0 3.48e-01 84.0% 65.3%
3992710 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 37.0 2.89e-01 79.0% 82.7%