←Back to structures

IMGVR_UViG_2617270920_000001-2617270920-2618032901

Arc-Vir

IMGVR_UViG_2617270920_000001-2617270920-2618032901

Identity

Kingdom:
archaea

Quality

70.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-97
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.81 60.0 6.17e-01 92.5% 82.9%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 58.0 5.45e-01 77.5% 64.9%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 58.0 5.21e-01 77.5% 59.3%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.78 69.0 5.46e-01 96.2% 73.5%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.76 48.0 4.87e-01 70.0% 64.2%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 57.0 5.14e-01 80.0% 95.3%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.74 56.0 5.22e-01 80.0% 70.4%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.74 55.0 4.51e-01 80.0% 47.6%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.73 62.0 5.12e-01 95.0% 74.3%
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 60.0 5.71e-01 100.0% 76.8%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.72 60.0 5.06e-01 90.0% 65.4%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 53.0 5.05e-01 78.8% 65.6%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.72 54.0 5.31e-01 80.0% 75.9%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 53.0 5.42e-01 80.0% 89.6%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.71 56.0 3.86e-01 83.7% 32.4%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 54.0 5.70e-01 80.0% 90.1%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.70 56.0 5.51e-01 85.0% 85.9%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.70 51.0 5.38e-01 80.0% 87.3%
3owaB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.70 61.0 4.99e-01 100.0% 61.8%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 50.0 4.52e-01 76.2% 54.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 51.0 5.44e-01 77.5% 92.5%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 61.0 4.61e-01 100.0% 82.0%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.68 45.0 4.00e-01 75.0% 46.6%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 55.0 5.67e-01 95.0% 93.4%
3rvyA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 54.0 4.85e-01 83.7% 89.7%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 55.0 5.38e-01 93.8% 81.6%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 48.0 4.90e-01 76.2% 90.9%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.66 44.0 4.90e-01 72.5% 93.2%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.66 43.0 3.95e-01 81.2% 52.0%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 54.0 4.07e-01 91.3% 65.0%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 48.0 4.60e-01 78.8% 91.5%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.64 53.0 4.40e-01 93.8% 65.4%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 49.0 3.65e-01 80.0% 46.6%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.64 55.0 4.13e-01 98.8% 46.2%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.65e-01 83.7% 74.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 48.0 4.58e-01 78.8% 70.7%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 46.0 3.91e-01 76.2% 47.0%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.63 50.0 3.96e-01 85.0% 71.3%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.63 49.0 5.03e-01 85.0% 88.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.63 45.0 4.35e-01 80.0% 67.0%
2id6A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 52.0 4.22e-01 92.5% 77.9%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 50.0 3.60e-01 90.0% 76.3%
1jwnA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 44.0 3.59e-01 76.2% 46.9%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.56 45.0 4.68e-01 86.3% 100.0%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 35.0 4.20e-01 72.5% 98.1%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 42.0 4.16e-01 86.3% 78.3%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.56 45.0 3.99e-01 87.5% 76.7%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 37.0 3.99e-01 70.0% 87.5%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 45.0 3.77e-01 92.5% 51.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528691 601.19.1.20 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.86 66.0 5.60e-01 81.2% 56.8%
3164951 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.85 66.0 5.02e-01 81.2% 60.0%
3659411 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.85 77.0 6.87e-01 98.8% 81.8%
3903775 192.8.1.419 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PF27603 0.82 61.0 5.26e-01 77.5% 54.2%
1030831 5094.1.1.1 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.81 62.0 4.87e-01 81.2% 40.2%
3257705 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.80 73.0 6.91e-01 100.0% 95.8%
3717860 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.80 62.0 5.98e-01 82.5% 81.1%
3848250 605.1.1.325 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › CCDC28 0.79 59.0 5.99e-01 80.0% 87.5%
4955751 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 69.0 6.69e-01 100.0% 92.2%
3784740 3712.1.1.1 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.78 57.0 5.92e-01 77.5% 85.3%
3725482 601.16.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase 0.77 57.0 4.91e-01 77.5% 51.7%
5064072 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.77 57.0 5.50e-01 78.8% 71.1%
4158879 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.76 69.0 6.65e-01 100.0% 88.9%
3834457 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.76 58.0 5.99e-01 81.2% 86.7%
3923707 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.75 61.0 5.82e-01 91.3% 74.7%
3709169 1008.1.1.29 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › DGF-1_C 0.75 64.0 6.14e-01 90.0% 85.6%
5064797 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.75 68.0 4.87e-01 98.8% 83.2%
4284121 1008.1.1.59 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Bac_export_2 0.74 58.0 4.26e-01 86.3% 32.7%
4240705 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.74 59.0 5.85e-01 93.8% 83.5%
1281062 632.18.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 › DUF4398 0.73 61.0 5.71e-01 100.0% 75.0%
4959131 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.72 59.0 6.11e-01 98.8% 94.7%
3492279 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.72 59.0 5.22e-01 87.5% 98.3%
3563871 603.1.1.121 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821 0.72 63.0 5.57e-01 95.0% 67.8%
4492294 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.71 54.0 3.76e-01 85.0% 25.5%
4653062 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.71 53.0 4.78e-01 80.0% 65.5%
3695649 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.71 52.0 4.41e-01 76.2% 65.0%
3548194 192.2.1.18 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.71 53.0 4.81e-01 81.2% 85.5%
5010469 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 60.0 5.56e-01 97.5% 80.0%
5065764 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.69 61.0 5.61e-01 98.8% 79.0%
4816472 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.69 53.0 4.65e-01 93.8% 55.1%
3448294 3826.1.1.33 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › eIF-4B 0.69 56.0 5.56e-01 87.5% 83.5%
4357455 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.68 47.0 4.61e-01 76.2% 67.1%
3511230 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.68 52.0 4.95e-01 85.0% 70.5%
4955756 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.67 52.0 5.33e-01 86.3% 89.3%
3485217 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.67 49.0 4.41e-01 76.2% 56.4%
3965415 3827.1.1.1 ↗ alpha duplicates or obligate multimers › Hypothetical protein PA0856 › Hypothetical protein PA0856 › Hypothetical protein PA0856 › DUF2059 0.67 47.0 4.12e-01 87.5% 49.2%
5036615 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.66 50.0 4.74e-01 80.0% 71.6%
3791225 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.66 59.0 5.22e-01 100.0% 71.3%
3174643 109.4.1.2224 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29001 0.66 50.0 3.47e-01 80.0% 25.2%
5027499 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.66 52.0 5.42e-01 93.8% 90.7%
5066732 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.65 54.0 3.81e-01 90.0% 30.2%
3937526 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.65 58.0 4.84e-01 100.0% 59.3%
4953267 632.11.1.19 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF2096_N 0.62 54.0 5.03e-01 100.0% 78.0%
3718498 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.62 43.0 4.15e-01 72.5% 65.6%
5005807 2003.1.1.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.61 47.0 3.35e-01 85.0% 25.7%
3264693 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.60 44.0 4.62e-01 91.3% 85.1%
4564044 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 44.0 3.20e-01 86.3% 25.4%
3858340 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 44.0 3.77e-01 82.5% 85.0%
4929191 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.57 46.0 4.73e-01 97.5% 94.7%