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IMGVR_UViG_2617271048_000001-2617271048-2618611651

Arc-Vir

IMGVR_UViG_2617271048_000001-2617271048-2618611651

Identity

Kingdom:
archaea

Quality

81.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-116
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.76 50.0 4.80e-01 82.1% 60.0%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.74 54.0 5.22e-01 83.6% 69.3%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 52.0 4.74e-01 82.1% 57.5%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 55.0 4.31e-01 82.1% 65.4%
2l8kA00 3.30.1330.220 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha 0.70 44.0 3.60e-01 86.6% 35.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 48.0 4.27e-01 83.6% 53.1%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.67 47.0 4.30e-01 79.1% 56.2%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 52.0 4.27e-01 85.1% 51.6%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.66 45.0 4.31e-01 80.6% 60.0%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.66 53.0 4.27e-01 86.6% 89.6%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 60.0 5.01e-01 100.0% 78.4%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 46.0 4.05e-01 79.1% 51.0%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 59.0 4.31e-01 100.0% 56.6%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 59.0 4.33e-01 100.0% 58.5%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 59.0 4.39e-01 100.0% 60.9%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 4.16e-01 100.0% 51.6%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 4.39e-01 100.0% 59.2%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 4.32e-01 100.0% 59.6%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 57.0 4.27e-01 100.0% 60.2%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 58.0 4.37e-01 100.0% 59.1%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.63 46.0 3.82e-01 85.1% 44.4%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 57.0 4.24e-01 100.0% 60.6%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 45.0 3.98e-01 100.0% 51.5%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 56.0 4.24e-01 100.0% 60.3%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.26e-01 100.0% 57.0%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 56.0 4.23e-01 100.0% 59.4%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 56.0 4.16e-01 100.0% 56.5%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 4.00e-01 100.0% 52.8%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 55.0 4.13e-01 100.0% 59.0%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 54.0 4.16e-01 100.0% 60.3%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.60 49.0 4.00e-01 91.0% 92.2%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 53.0 4.41e-01 100.0% 68.1%
1mfgA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 45.0 4.05e-01 86.6% 96.8%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.57 45.0 4.03e-01 91.0% 61.5%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.56 48.0 3.40e-01 100.0% 38.8%
1przA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.56 48.0 3.52e-01 100.0% 43.1%
3w1eA01 3.30.1660.40 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain 0.55 43.0 3.90e-01 85.1% 93.3%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 42.0 3.95e-01 83.6% 80.2%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.38e-01 91.0% 72.2%
6fdyU01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 41.0 3.88e-01 82.1% 68.8%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 3.49e-01 100.0% 73.0%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 44.0 2.93e-01 100.0% 40.8%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.52e-01 91.0% 79.4%
4redB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.69e-01 80.6% 65.5%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 43.0 3.48e-01 100.0% 47.9%
2esrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 45.0 3.40e-01 100.0% 86.3%
1zxfA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 38.0 3.00e-01 85.1% 75.5%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.81 58.0 5.17e-01 83.6% 55.6%
4034130 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 54.0 4.62e-01 85.1% 46.0%
3959560 1.1.16.0 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain 0.79 54.0 4.55e-01 85.1% 43.6%
3611250 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 62.0 4.68e-01 85.1% 69.7%
1213522 1.1.13.25 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DTP-pb9_B-dom 0.74 52.0 4.73e-01 80.6% 56.3%
192 1.1.9.13 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF2584 0.74 54.0 5.12e-01 83.6% 65.8%
3787546 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.73 58.0 3.65e-01 85.1% 37.7%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 62.0 5.37e-01 100.0% 61.0%
4955533 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 55.0 4.65e-01 83.6% 50.5%
3171334 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.72 57.0 4.82e-01 85.1% 64.5%
5079595 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.72 53.0 4.68e-01 82.1% 54.7%
3946118 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 55.0 5.26e-01 85.1% 72.0%
4638448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.71 55.0 4.61e-01 83.6% 51.4%
4507179 1.1.9.48 beta barrels › cradle loop barrel › RIFT-related › PUA domain › AAA 0.71 55.0 3.20e-01 85.1% 18.2%
4469533 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.70 56.0 3.68e-01 85.1% 28.8%
4492784 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.69 53.0 4.29e-01 85.1% 45.0%
3589736 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 55.0 5.48e-01 86.6% 85.7%
4051617 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.69 55.0 4.38e-01 85.1% 45.6%
3800913 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 53.0 4.17e-01 85.1% 41.5%
4402448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.67 52.0 4.23e-01 86.6% 45.8%
4132799 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.67 62.0 4.60e-01 100.0% 58.7%
4344991 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.67 59.0 4.79e-01 100.0% 53.1%
3598687 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 62.0 4.56e-01 100.0% 60.0%
3741921 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 59.0 5.09e-01 100.0% 62.9%
4947671 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 49.0 4.68e-01 85.1% 66.3%
3384073 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 61.0 4.94e-01 100.0% 56.7%
3741028 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.66 59.0 5.06e-01 100.0% 62.9%
4072320 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.66 61.0 4.50e-01 100.0% 60.6%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 58.0 4.88e-01 100.0% 71.3%
5071089 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 44.0 4.99e-01 77.6% 94.0%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 61.0 4.89e-01 100.0% 72.5%
1560729 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.65 58.0 4.51e-01 100.0% 47.9%
3688711 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.65 57.0 4.83e-01 100.0% 60.0%
3187444 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.64 58.0 4.84e-01 100.0% 67.0%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 4.38e-01 100.0% 58.9%
4316037 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 58.0 4.85e-01 100.0% 80.0%
4551218 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 58.0 4.26e-01 100.0% 54.5%
4496885 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.63 57.0 4.05e-01 100.0% 52.1%
3226112 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.62 51.0 4.14e-01 92.5% 71.5%
4958319 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.61 47.0 3.58e-01 83.6% 44.0%
4026937 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 4.01e-01 100.0% 52.4%
3963092 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 56.0 4.94e-01 100.0% 87.4%
4214150 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.61 55.0 4.62e-01 100.0% 73.6%
3224730 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 52.0 4.45e-01 100.0% 59.1%
4666540 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 44.0 4.06e-01 83.6% 61.2%
5025266 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.21e-01 100.0% 57.1%
5044826 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.60 47.0 3.50e-01 86.6% 81.7%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.16e-01 83.6% 69.3%
3971176 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 53.0 3.89e-01 100.0% 84.6%
4095224 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.03e-01 85.1% 28.4%
3848539 58.1.1.1 beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 0.58 53.0 4.41e-01 100.0% 67.0%
4237254 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 46.0 4.27e-01 89.6% 90.6%
4371063 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.24e-01 100.0% 66.0%
4128441 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 43.0 4.52e-01 100.0% 100.0%
3267247 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.54 43.0 3.50e-01 100.0% 44.3%
1644767 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 36.0 3.34e-01 100.0% 54.0%
3573665 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 41.0 3.81e-01 98.5% 65.6%
3475743 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 40.0 3.81e-01 98.5% 70.0%
4633844 223.1.1.72 a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES2 0.52 45.0 3.16e-01 100.0% 30.6%
3732045 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 46.0 3.10e-01 100.0% 29.8%
3956757 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.50e-01 83.6% 62.1%
4673207 256.1.1.10 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › MinE 0.50 40.0 3.81e-01 100.0% 72.9%